Gene VIBHAR_01353 details

Gene Information

• Locus tag: VIBHAR_01353
• Symbol: sdhA
• ID: 5556108
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 1361912
• End bp: 1363678
• Gene Length: 1767 bp
• Protein Length: 588 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640906845
• Product: succinate dehydrogenase flavoprotein subunit
• Protein accession: YP_001444557
• Protein GI: 156973650
• COG category: [C] Energy production and conversion
• COG ID: [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit
• TIGRFAM ID: [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup; [TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGTCTATTC CAGTTCGTGA GTTTGATGCC GTAGTAATCG GCGCTGGTGG TGCAGGTATG 
CGCGCTGCAC TGCAAATTTC GGAGCAAGGC CTATCTTGTG CTTTGTTGTC AAAAGTTTTC 
CCAACTCGTT CTCATACTGT ATCTGCGCAA GGCGGTATCA CGGTTGCGCT TGGTAACTCG 
CACAAGGACG ATTGGCAGTG GCACATGTAC GACACAGTAA AAGGTTCTGA TTACATTGGT 
GACCAGAATG CTATCGAGTA CATGTGTAAG AATGGCCCTG AGTCGGTTAT CGAGCTAGAA 
AAAATGGGTC TACCATTCTC TCGTTTCGAT AACGGTTCTA TCTACCAACG TCCGTTTGGT 
GGCCAATCGA AAGAATTTGG TGGTGAGCAA GCGGCTCGTA CTGCTGCTGC GGCAGACCGT 
ACTGGTCACG CTCTTCTTCA TACGCTTTAC CAACAAAACG TTAAACACAA AACAACCATC 
TTCTCTGAGT GGTACGCACT AGACTTGGTG AAAAACCAAG ATGGCGCGAT CATGGGTTGT 
ACTGCTATCT GTATGGAAAC GGGCGAGATT TGTTACTTCA AATCGAAAGC AACTATCCTA 
GCAACAGGTG GCGCGGGTCG TATTTACGCT TCTACAACGA ACGCTCACAT CAATACTGGT 
GACGGTGTTG GTATGGCGCT TCGTGCTGGC GTTCCAATGC AAGACATGGA AATGTGGCAG 
TTCCACCCAA CGGGTATCGC TGGCGCAGGT GTTCTTGTTA CTGAAGGTTG TCGTGGTGAA 
GGTGGTTACC TTCTAAATAA AGACGGCGAG CGCTTCATGG AACGTTACGC ACCAAACGCG 
AAAGACCTTG CTGGCCGTGA CGTAGTAGCG CGTTCAATGA TGATTGAAAT CCGTGAAGGT 
CGTGGTTGTG ACGGCCCTTG GGGTCCGCAC ATCAAGCTGA AACTGGATCA CCTAGGTAAA 
GACGTTCTTG AATCTCGTCT ACCAGGTATC TGTGAGCTTT CACGTACATT CGCGCATGTG 
GATCCAGTTA AAGAGCCAAT TCCAGTAATC CCAACCTGTC ACTACATGAT GGGCGGTGTT 
CCAACACAAG TTTCAGGTCA AGCAATCAAG CAGACTGCTG ACGGCAATGA CGTTGAAGTT 
CAAGGTCTAT ACGCATGTGG TGAAATTGCT TCGGTATCAG TACACGGTGC AAACCGTCTG 
GGTGGTAACT CACTGCTTGA CCTTGTGGTA TTTGGTCGCG CGACAGGCCT ACACCTTGGC 
GAAACATTGG CTGCACAAGC TGAAGCTCGC CCAGCAACTG AATCTGACAT TGAAGCGTCT 
CTAGCGCGTA CTATGCGTTG GGAAAACAGC ACTGGTGGTG AAGATCCAGT TCAAATCCGT 
AAAGATCTGC AATCTTGCAT GCAAAACAGC TTCTCGGTAT TCCGTGAAGG TGATGCAATG 
GCAACAGGTC TAGAAGAGCT GAAAGTGATC CGCGAGCGTC TGCAAAACGC ACACCTTGCT 
GATAAGTCTT CTGAATTCAA CACGCAACGT ATCGAGTGTC TAGAGCTAGA CAACCTGATG 
GAAACTGCAT TCTCTACAGC TGTAGCGGCG AACTACCGTA CAGAAAGCCG TGGTGCACAT 
GCTCGTTTCG ACTTCCCAGA GCGTGATGAT GAAAACTGGC TATGCCACTC TATCTACAAC 
CCGGAAACAG AAGCGATGAC GAAGCGTGAT GTAAACATGA CGCCAGTTCA CCGTGACGCT 
TTCCCACCGA AAGTACGTAC ATACTAA 

 

Protein sequence

MSIPVREFDA VVIGAGGAGM RAALQISEQG LSCALLSKVF PTRSHTVSAQ GGITVALGNS 
HKDDWQWHMY DTVKGSDYIG DQNAIEYMCK NGPESVIELE KMGLPFSRFD NGSIYQRPFG 
GQSKEFGGEQ AARTAAAADR TGHALLHTLY QQNVKHKTTI FSEWYALDLV KNQDGAIMGC 
TAICMETGEI CYFKSKATIL ATGGAGRIYA STTNAHINTG DGVGMALRAG VPMQDMEMWQ 
FHPTGIAGAG VLVTEGCRGE GGYLLNKDGE RFMERYAPNA KDLAGRDVVA RSMMIEIREG 
RGCDGPWGPH IKLKLDHLGK DVLESRLPGI CELSRTFAHV DPVKEPIPVI PTCHYMMGGV 
PTQVSGQAIK QTADGNDVEV QGLYACGEIA SVSVHGANRL GGNSLLDLVV FGRATGLHLG 
ETLAAQAEAR PATESDIEAS LARTMRWENS TGGEDPVQIR KDLQSCMQNS FSVFREGDAM 
ATGLEELKVI RERLQNAHLA DKSSEFNTQR IECLELDNLM ETAFSTAVAA NYRTESRGAH 
ARFDFPERDD ENWLCHSIYN PETEAMTKRD VNMTPVHRDA FPPKVRTY