Gene VIBHAR_01312 details

Gene Information

• Locus tag: VIBHAR_01312
• Symbol: ligA
• ID: 5553816
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 1319828
• End bp: 1321840
• Gene Length: 2013 bp
• Protein Length: 670 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 640906804
• Product: NAD-dependent DNA ligase LigA
• Protein accession: YP_001444516
• Protein GI: 156973609
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II)
• TIGRFAM ID: [TIGR00575] DNA ligase, NAD-dependent

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCTGAAT CAGTACTTCA GCGACTAGAA GAACTAAAAG AGTCGCTGCA TTACCACGCT 
GTTCGTTACT ACGTGGAAGA TAACCCAGAG ATTCCAGATG CAGAATACGA CCGTATGATG 
CGTGAACTAT TGGATATTGA AGCCGAACAC CCAGAACTGG TTACTGTTGA TTCTCCAAGC 
CTACGTGTTG GTGGGCAGCC ATTGTCTGAA TTCAGCCAAG TTACTCACGA AGTGCCAATG 
CTGTCATTAG ACAACGCTTT TGACGATGCA GAGCTAGATG GCTTTCATAA ACGAGCTCAA 
GACCGTGTCG TTGGCCATAC CATTAAACAA TACTGTTGCG AGCCTAAGCT TGATGGCTTG 
GCCGTGAGCT TACTGTATGA AAATGGTGTA TTGGTGCAAG CTGCGACTCG TGGTGACGGT 
ACGACGGGTG AAAACATCAC TGAGAACGTA CGAACCATCA GTGCTATTCC ATTAAAGTTA 
CAAGGTAAAG GCTGGCCGAC GCGTCTAGAA GTGCGCGGTG AAGTATTCAT GCCAAAAGCC 
GGTTTTGACA AACTTAACGA GAACGCACGA AAAAAAGGCG AGAAAGTTTT TGTTAACCCA 
CGCAATGCGG CAGCAGGTAG CCTACGTCAA TTAGATTCTC GTATCACGGC TTCACGTCCT 
CTAAGCTTTT ATGCATACAG TGTTGGCGTT GTGGAGGGGG CAACTCTTGC TAACAGTCAC 
TACGAACGAT TCTTACAAAT CAAATCGTGG GGCTTGCCAA TGTGTCCAGA AACCAAGCGA 
GTCGATAGCT TGGAAGAGGT TAAAGCGTAC TACCAAGATA TTCTTACTCG CCGTGAAGCT 
TTGGCTTACG AAATTGACGG TGTCGTTATC AAAGTGGACG ACATTGCGAT TCAAGAGCGT 
TTAGGTTTTG TTGCTCGTGC TCCTCGTTGG GCGATTGCCT ACAAATTCCC GGCTCAGGAA 
GAAATCACCA CACTGAACGA AGTCGAGTTC CAAGTTGGTC GTACTGGCGC GATTACTCCA 
GTAGCCAAGC TTGAACCAAT ATTTGTTGGC GGTGTAACGG TCTCTAACGC GACACTTCAT 
AACGCAGACG AGATTGAGCG TCTGCAAGTG ATGGTCGGTG ACCAAGTTGT TATTCGTCGT 
GCTGGTGACG TGATTCCACA AGTGGTGTCT GTTATCAAAG AGCGTCGCCC CGAAACGGCT 
CGTGAAATCC TTTTCCCAGA TGCTTGTCCG GTATGTGGCT CTCACGTTGA GCGTATCGAA 
GGTGAAGCGG TAACACGTTG TACTGGTGGC TTAGTATGTC AGGCACAACG TAAAGAAGCG 
TTAAAGCATT TTGTTTCCCG CAAAGCGTTA GACGTAGATG GCCTGGGTGA CAAGGTGATT 
GAACAGCTAG TGGATCGTGA GATGGTGGAA ACCCCAGCTG ATTTATTCAA GCTTTCTGCG 
GGTGTCTTAA CAGTACTAGA GCGTATGGGG CCTAAATCGG CAACCAACGT TGTTAATGCG 
CTTGAAAAAT CAAAACTCAC AACGTTGCCA CGCTTTTTGT ACTCGCTGGG TATTCGTGAA 
GTCGGGGAGG CGACAGCGGC CAACCTAGCA CAATACTTCA AAAACCTAGA TGCAATTCAG 
CAAGCAACAG AAGAGCAATT GATTGAAGTT CAGGACATTG GTGTGATCGT AGCAAAACAT 
ATTACGACGT TCTTTGGTGA AGAGAAAAAC CAAGCCGTTG TTCAAGACCT GCTAGCACAA 
GGCATCAACT GGCCAGAGAT TGCAGCACCA CAAGAGGGTG TTGAATTACC ATTGGAAGGC 
AAGACGGTTG TATTAACTGG CACCCTTTCT CAACTAGGTC GCTCAGAAGC GAAAGAAGCA 
TTACAGAATC TAGGCGCGAA AGTAACGGGT AGTGTATCGA AGAAAACAGA CATTCTGTTT 
GCTGGTGAGA ATGCTGGTTC TAAGCTTGCA AAAGCACAAG AGCTAGGTAT TGAGATTCAA 
ACTGAACAAG ACTTGCTCAA CTTAATGAAA TAG 

 

Protein sequence

MSESVLQRLE ELKESLHYHA VRYYVEDNPE IPDAEYDRMM RELLDIEAEH PELVTVDSPS 
LRVGGQPLSE FSQVTHEVPM LSLDNAFDDA ELDGFHKRAQ DRVVGHTIKQ YCCEPKLDGL 
AVSLLYENGV LVQAATRGDG TTGENITENV RTISAIPLKL QGKGWPTRLE VRGEVFMPKA 
GFDKLNENAR KKGEKVFVNP RNAAAGSLRQ LDSRITASRP LSFYAYSVGV VEGATLANSH 
YERFLQIKSW GLPMCPETKR VDSLEEVKAY YQDILTRREA LAYEIDGVVI KVDDIAIQER 
LGFVARAPRW AIAYKFPAQE EITTLNEVEF QVGRTGAITP VAKLEPIFVG GVTVSNATLH 
NADEIERLQV MVGDQVVIRR AGDVIPQVVS VIKERRPETA REILFPDACP VCGSHVERIE 
GEAVTRCTGG LVCQAQRKEA LKHFVSRKAL DVDGLGDKVI EQLVDREMVE TPADLFKLSA 
GVLTVLERMG PKSATNVVNA LEKSKLTTLP RFLYSLGIRE VGEATAANLA QYFKNLDAIQ 
QATEEQLIEV QDIGVIVAKH ITTFFGEEKN QAVVQDLLAQ GINWPEIAAP QEGVELPLEG 
KTVVLTGTLS QLGRSEAKEA LQNLGAKVTG SVSKKTDILF AGENAGSKLA KAQELGIEIQ 
TEQDLLNLMK