Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_01173 |
Symbol | |
ID | 5555299 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 1191030 |
End bp | 1192895 |
Gene Length | 1866 bp |
Protein Length | 621 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 640906665 |
Product | 1-deoxy-D-xylulose-5-phosphate synthase |
Protein accession | YP_001444390 |
Protein GI | 156973483 |
COG category | [H] Coenzyme transport and metabolism [I] Lipid transport and metabolism |
COG ID | [COG1154] Deoxyxylulose-5-phosphate synthase |
TIGRFAM ID | [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTCTTG ATATTTCAAA GTACCCAACA CTGGCGTTAG CAAATACACC GGAGGAGTTG CGTCTTCTTC CGAAAGAAAC ATTGCCAACA TTGTGCGATG AACTACGCAC GTATCTGCTA AATTCAGTGA GTCAGTCTAG CGGACACTTA GCGTCTGGCT TAGGCACAGT AGAGCTAACC GTAGCTCTGC ATTATGTATA CAACACACCC GTAGATCAGT TGATCTGGGA CGTAGGCCAC CAGGCTTACC CACACAAGAT TCTCACTGGT CGTCGTGATC AGATGCCAAC TATCCGTCAG AAAGACGGCC TTCACCCATT CCCATGGCGT GAAGAGAGCG AATACGACAC CCTATCCGTT GGTCACTCAT CTACTTCTAT CAGTGCAGGT CTTGGCATGG CCATCAGTGC GCAAAAAGAA GGTGAAGGTC GTAAAGTGGT CAGCGTTATT GGCGACGGTG CAATCACCGC TGGTATGGCT TTCGAAGCGA TGAACCACGC TGGTGACGTT CACCCAGATA TGCTGGTGAT TCTGAACGAT AACGAAATGT CGATCTCAGA AAACGTAGGC GCACTGAACA ACCACCTTGC TAAAGTCCTT TCTGGCAGCC TATACACCTC TATCCGTGAA GGCGGTAAGA AAGTGTTGTC TGGCGTCCCA CCAATTAAAG AGCTGGTTCG TCGTACGGAA GAACACCTAA AAGGCATGGT TGTTCCTGGC ACCTTATTCG AAGAGCTAGG CTTCAACTAC ATCGGCCCTA TTGATGGACA CGATGTGAAT GAGCTAGTTA AAACGCTGAA AAACATGCGT GAGCTGAAAG GCCCTCAATT CCTGCACATC ATGACCAAGA AAGGCAAAGG TTATGAGCCA GCAGAAAAAG ACCCTATTGG TTATCACGCA GTGCCAAAGT TTGCTCCCTC AAACAACAGT TTGCCGAAGA GCAGCGGTGG CAAGCCAAAC TTCTCTAAGA TCTTTGGTGA TTTCCTATGT GACATGGCGG CGCAAGATCC TAAGCTGATG GCGATTACGC CAGCGATGCG TGAAGGCTCT GGTATGGTTC GCTTCTCGAA AGAGTACCCA GAACAGTACT TTGACGTCGC GATTGCAGAA CAGCACGCCG TGACTCTCGC GACGGGTATG GCAATTGCGG GCGATCATCC GATTGTAGCA ATCTACTCTA CCTTCCTACA GCGTGGTTAC GATCAGTTGA TTCACGATGT GGCGATCATG GACTTGCCGG TGATGTTCGC TATCGACCGT GCTGGTCTGG TTGGCGCCGA TGGCCAAACC CACCAAGGTG CGTTTGATCT TAGCTTCATG CGTTGTATCC CGAACATGGT GATCATGGCT CCAAGTGACG AAAACGAATG TCGTCAAATG CTGTACACGG GTCATAAGCA CACAGGTCCA AGCGCGGTTC GTTACCCACG CGGTAGCGGC ATGGGCACAG ACATCGAAAA AGACTTCACT GCACTTGAAA TCGGTAAAGG TCGTATCGTT CGTAAAGGTG AAAAAGTGGC AATTCTTAGC TTCGGTACCT TCTTAGGTAA CGCGCTAGAA GCAGCTGAAA ACCTAAACGC AACGGTAGCA GACATGCGCT TTGTTAAGCC ACTTGATGAA GCCTTGATCC GACAGCTAGC AGCTGAGCAC GATGTGCTAG TTACGCTCGA AGAAAACGCG ATCGCTGGTG GTGCTGGCGC GGGTGTGATT GAGTTTATGA TGCAAGATAA GATCATCAAG CCTGTACTCA ACCTTGGCCT GCCAGATCGC TTCGTTCCTC AAGGCACACA AGACGAGCTA CACGAAGATC TTGGCTTAGA TGCGAAAGGC ATCGAGAAGT CGATCAACGA TTACTTAGCT AAGTAA
|
Protein sequence | MTLDISKYPT LALANTPEEL RLLPKETLPT LCDELRTYLL NSVSQSSGHL ASGLGTVELT VALHYVYNTP VDQLIWDVGH QAYPHKILTG RRDQMPTIRQ KDGLHPFPWR EESEYDTLSV GHSSTSISAG LGMAISAQKE GEGRKVVSVI GDGAITAGMA FEAMNHAGDV HPDMLVILND NEMSISENVG ALNNHLAKVL SGSLYTSIRE GGKKVLSGVP PIKELVRRTE EHLKGMVVPG TLFEELGFNY IGPIDGHDVN ELVKTLKNMR ELKGPQFLHI MTKKGKGYEP AEKDPIGYHA VPKFAPSNNS LPKSSGGKPN FSKIFGDFLC DMAAQDPKLM AITPAMREGS GMVRFSKEYP EQYFDVAIAE QHAVTLATGM AIAGDHPIVA IYSTFLQRGY DQLIHDVAIM DLPVMFAIDR AGLVGADGQT HQGAFDLSFM RCIPNMVIMA PSDENECRQM LYTGHKHTGP SAVRYPRGSG MGTDIEKDFT ALEIGKGRIV RKGEKVAILS FGTFLGNALE AAENLNATVA DMRFVKPLDE ALIRQLAAEH DVLVTLEENA IAGGAGAGVI EFMMQDKIIK PVLNLGLPDR FVPQGTQDEL HEDLGLDAKG IEKSINDYLA K
|
| |