Gene VIBHAR_01048 details

Gene Information

• Locus tag: VIBHAR_01048
• Symbol: secD
• ID: 5555717
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio harveyi ATCC BAA-1116
• Kingdom: Bacteria
• Replicon accession: NC_009783
• Strand: +
• Start bp: 1057311
• End bp: 1059134
• Gene Length: 1824 bp
• Protein Length: 607 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640906542
• Product: preprotein translocase subunit SecD
• Protein accession: YP_001444268
• Protein GI: 156973361
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTATTTT TTGCCATCAT CACCGCTGCG TTATACGCAC TTCCAAATAT CTACGGTGAA 
GATCCGGCTA TTCAAGTTAC AGGGGCGCGT GGCGCCTCTG TAGATATGTC AACGCTGGAT 
GCTGTCACCA AAGCTCTTGA TAAAGAGCAT CTCTCTCATA AATCCATTGC TCTCGAGAAT 
GGATCAATCC TTGTTCGTTT CAATGACACT GACACTCAAA TCAGTGCCCG CGATATCATC 
AGCGAAGCGC TTGGCAAAGA TAAAATTGTT GCACTAAACC TTGCTCCATC TACGCCAGAT 
TGGCTAGAAG CAATCGGTGC GTCGCCACTT AAGCTGGGTC TTGACCTACG TGGTGGTGTT 
CACTTCCTAA TGGAAGTTGA CATGGACGCG GCGATGGAGA AGCTGGTTGG TCAGCAAGAA 
GAAGCTTTCC GTAGCGAACT TCGTGAAGCT AAGATTCGTT ACCGTGCAAT CCGTCCTTCT 
GGTACAGAAG GTGTGGAAGT ATTGCTACGT AATGAGGAGC AGCTAGCGGA AGCGAAAGCA 
ACGCTAGAAA AGAATCACCC AGACATGAAC TTTGTCGACT CTGATTCTAA TGGTCGTTAC 
GCGTTGATTG CCACCTTTAC CGAGCAACGT TTACAAGAGA TACGTAACTA CGCAGTTGAA 
CAAAACATCA CGATTCTTCG TAACCGTGTT AACGAACTGG GTGTTGCTGA GCCACTGGTT 
CAACGTCAAG GTGCTAGCCG CATCGTAGTT GAGCTGCCTG GTGTTCAAGA CACCGCTCGT 
GCGAAGGAAA TTCTAGGTGC TACGGCAACA CTAGAGTTCC GCGAGGTTGA CGATAAAGCT 
GACCTATCAG CGGCGGCAAA TGGCCGTGCG CCAGCAGGTA GCGAAATCAA GATGGACCGT 
GATGGTCGCC CAGTTGTGCT TAAGAAGCGC GTTATTCTTG GTGGTCAAAG TATCACGGAT 
GCAAGTTCAA GTGTTGATGA ATACGGTCGC CCACAAGTTA ACATCTCGCT AGATAGCGAA 
GGCGGTAACA AGATGTCTGC GTTCTCTAAG AAGAACATCG GTAAGCTAAT GGCTACCGTG 
TTTGCAGAAT ACAAAGACAG TGGCCGTCGT ACGCCAGAAG GCAAAGTTAT CCTTGATAAG 
CACGAAGAAG TCATCAACCA AGCAACGATT CAATCGGCTC TTGGTCGTAA CTTCCGTATC 
ACAGGTATCG ACTCTGCAGC AGAAGCACAC AACCTAGCAC TTCTACTACG TGCAGGTGCA 
CTGATCGCAC CTATCTCTAT CGTTGAAGAA CGTACCATTG GTCCATCAAT GGGTCAGCAA 
AACATCGATA TGGGTATCCA AGCGTGTATC TGGGGTATGG TTGCGGTAAT GCTGTTTACG 
CTGCTTTACT ATCGTGGCTT CGGTCTGATT GCTAACATTG CGTTGATGGC AAACTTGGTT 
CTTATCATTG GTGTTATGTC GATGATTCCG GGTGCTACCA TGACGCTGCC TGGTATTGCC 
GGTATCGTAT TAACCGTCGG TATGGCGGTC GATGCGAACG TGCTGATATT CGAGCGTATC 
CGTGAAGAGC TTCGAGATGG ACGCAGTCCT CAGCAAGCGA TTCACCAAGG TTACGCAAAC 
GCATTCAGTA CTATTGCCGA TGCGAACATC ACAACGCTTA TCACTGCGAT CATTCTATTT 
GCAGTGGGTA CAGGTGCGGT GAAAGGCTTC GCAGTAACAC TATCTATCGG TATCTTAACT 
TCAATGTTCA CCGCTATTGT AGGTACACGT TGTATCGTGA ACCTGATTTA CGGTGGCAAA 
CGCGTTGATA AATTGTCGAT CTAA 

 

Protein sequence

MVFFAIITAA LYALPNIYGE DPAIQVTGAR GASVDMSTLD AVTKALDKEH LSHKSIALEN 
GSILVRFNDT DTQISARDII SEALGKDKIV ALNLAPSTPD WLEAIGASPL KLGLDLRGGV 
HFLMEVDMDA AMEKLVGQQE EAFRSELREA KIRYRAIRPS GTEGVEVLLR NEEQLAEAKA 
TLEKNHPDMN FVDSDSNGRY ALIATFTEQR LQEIRNYAVE QNITILRNRV NELGVAEPLV 
QRQGASRIVV ELPGVQDTAR AKEILGATAT LEFREVDDKA DLSAAANGRA PAGSEIKMDR 
DGRPVVLKKR VILGGQSITD ASSSVDEYGR PQVNISLDSE GGNKMSAFSK KNIGKLMATV 
FAEYKDSGRR TPEGKVILDK HEEVINQATI QSALGRNFRI TGIDSAAEAH NLALLLRAGA 
LIAPISIVEE RTIGPSMGQQ NIDMGIQACI WGMVAVMLFT LLYYRGFGLI ANIALMANLV 
LIIGVMSMIP GATMTLPGIA GIVLTVGMAV DANVLIFERI REELRDGRSP QQAIHQGYAN 
AFSTIADANI TTLITAIILF AVGTGAVKGF AVTLSIGILT SMFTAIVGTR CIVNLIYGGK 
RVDKLSI