Gene VIBHAR_00900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVIBHAR_00900 
SymbolmurD 
ID5554036 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio harveyi ATCC BAA-1116 
KingdomBacteria 
Replicon accessionNC_009783 
Strand
Start bp892226 
End bp893539 
Gene Length1314 bp 
Protein Length437 aa 
Translation table11 
GC content48% 
IMG OID640906394 
ProductUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 
Protein accessionYP_001444126 
Protein GI156973219 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAACGTT GGCAAAACAT ACATAAGGTC GTCGTTGTAG GGCTCGGTAT TACCGGGCTC 
TCTGTCGTTA AACACCTAAC AAAAACACAG CCGCAACTGA CGGTTAAAGT CATCGATACA
CGTGCGACTC CTCCGGGAAC TGAGCGCTTA CCAGAGCAAG TTGAACTGCA CAGCGGTGGT
TGGAATACTG AGTGGCTTGC AGAGGCCGAC TTAGTGGTGA CTAACCCGGG TATTGCCTTA
GCGACACCAG AGATACAAGA GGTTCTTGCG AAAGGAGCGC CAGTTGTTGG TGATATCGAA
CTCTTCGCGT GGGCAGTCGA TAAGCCAGTT ATTGCGATTA CCGGTTCTAA TGGTAAAAGC
ACAGTTACTG ACTTAACGGG TGTAATGGCG AAGGCTGCAG GCTTAACAGT GGGTGTTGGT
GGCAATATCG GTGTTCCTGC TCTCGATTTG CTAGAGCAAG ATGCAGACTT GTATGTGCTT
GAGTTGTCCA GTTTCCAGCT CGAAAGCACT TTAAGCCTGA AGCTTAAAGC GGCGGCGTTT
CTGAACCTTT CCGAAGATCA CATGGATCGC TATGAGGGCA TGTCGGACTA CCGACAAGCT
AAACTGCGCA TTTTTGATAA CGCGGAGCTG GCAGTAGTTA ACCGTGATGA TCAAGAAACC
TTCCCTGATA CTGAAACACC GTTGGTGACG TTCGGAAGTG ATGAGCAAGC TTACGGCCTT
GAAGCAGATG GTAACCGTAC TTGGTTGCTT GATCATGGTC AGCGTGTGAT TGCCAGTGAT
GAATTAAAGC TGGTTGGTAA GCACAATCTA GCTAACGCGC TTGTGGTACT TGCTCTGCTT
AAAGCGGCGG ATGTGGACTA TCACAAATCA TTGAATGCAC TGAAAACTTA CACGGGTTTG
ACACATCGAT GCCAAGTGGT TGCGGATAAT CGTGGCGTAA AATGGGTGAA TGACTCTAAA
GCGACCAATA TTGCGAGCAC TATAGCTGCA CTCTCTGGCT TGGAGTCGAC AGGCAAGCTG
TACTTGCTTG TTGGTGGAGT TGGCAAAGGT GCTGACTTCA CTCCACTAAA ACCGATCTTC
GCAACACTGA ACCTACAACT TTGCTGCTTT GGCGCGGATG GCGATGAATT TATGCCACTG
CATGAATCAG CAACTCGTTT CGACACCATG GAAGATGTGA TTCAACAGAT ATCTTCGCAG
TTAAAAACGG GCGATATGGT GATGCTGTCT CCGGCATGTG CTAGCTTTGA TCAATTCGAC
AACTTTATGG CAAGAGGTGA CGCATTCGCT GCTCTTGCTG AGAAATACGC ATAA
 
Protein sequence
MERWQNIHKV VVVGLGITGL SVVKHLTKTQ PQLTVKVIDT RATPPGTERL PEQVELHSGG 
WNTEWLAEAD LVVTNPGIAL ATPEIQEVLA KGAPVVGDIE LFAWAVDKPV IAITGSNGKS
TVTDLTGVMA KAAGLTVGVG GNIGVPALDL LEQDADLYVL ELSSFQLEST LSLKLKAAAF
LNLSEDHMDR YEGMSDYRQA KLRIFDNAEL AVVNRDDQET FPDTETPLVT FGSDEQAYGL
EADGNRTWLL DHGQRVIASD ELKLVGKHNL ANALVVLALL KAADVDYHKS LNALKTYTGL
THRCQVVADN RGVKWVNDSK ATNIASTIAA LSGLESTGKL YLLVGGVGKG ADFTPLKPIF
ATLNLQLCCF GADGDEFMPL HESATRFDTM EDVIQQISSQ LKTGDMVMLS PACASFDQFD
NFMARGDAFA ALAEKYA