Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_00848 |
Symbol | |
ID | 5556318 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 835910 |
End bp | 837772 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640906342 |
Product | RNA polymerase sigma factor RpoD |
Protein accession | YP_001444075 |
Protein GI | 156973168 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCAAA ATCCGCAGTC ACAGCTAAAG TTACTTGTTA TTAAAGGCAA GGAACAAGGC TATCTGACCT ACGCCGAAGT AAATGACCAC CTACCTGCTG AAATCGTAGA TTCAGAACAG GTAGAAGACA TCATTCAGAT GATCAACGAC ATGGGTATCA AGGTAGTAGA AACTGCTCCT GATGCCGATG ATCTAGCGCT GAACGATGAC ACAAACATTA CCGATGAAGA TGCAGCTGAA GCTGCAGCAG CAGCACTTTC TAGCGTAGAA AGTGAAATTG GTCGTACAAC AGACCCAGTG CGCATGTACA TGCGTGAAAT GGGTACTGTG GAGCTGCTGA CTCGCGAAGG CGAAATCGAC ATCGCAAAAC GTATTGAAGA AGGTATTAAC CAAGTTCAAT CGTCTGTTGC TGAATACCCT GGCACTATCC CATACATTCT TGAGCAGTTT GATAAAGTTC AAGCAGAAGA ACTTCGTCTA ACAGACCTAA TCTCTGGATT TGTTGACCCT GATGCAGACG ATACAGCTGC ACCAACAGCA ACGCACATCG GTTCTGAGCT GACTGAATCT CAGCTAGAAG AAGAAGATGA AGAAGACGTT GATGACGACG AAGAAAGCGA TGACGATTCA GATGATTCTG AAGAAGATGT TGGTATCGAC CCAGAGCTAG CGCTTGAGAA ATTCAACCAG CTACGCAGCA CATACCAAAA CCTTCAGCTT GCAATCAACG AACACGGTTA CGAGAGCCCT AAAGCGACCG TAGCTAACGA GTTGATGCTA GACGTATTCA AAGAATTCCG TCTAACGCCA AAACAGTTCG ATCACCTAGT GAATGAACTG CGCACAGCAA TGGATCGCGT TCGTACTCAA GAACGTCTGA TCATGAAGTC TGCAGTTGAA TACGGCAAAA TGCCGAAGAA ATCATTCATC GCGCTGTTCA CAGGCAACGA ATCAAGCGAA GCATGGCTAG ATGAGATCCT AGCATCTGAC AAGCCATACG CTGAAAAGAT CAAACGTAAC GAAGAAGAAA TCCGTCGTTC AATCGCTAAA CTAAAAATGA TTGAAGAAGA GACTTCTCTA AACGTTCAAA ACATTAAAGA CATCAGCCGT CGCATGTCTA TCGGTGAAGC AAAAGCTCGC CGTGCGAAGA AAGAGATGGT TGAAGCGAAC TTACGTCTAG TAATTTCTAT CGCGAAGAAA TACACCAACC GTGGTCTACA GTTCTTGGAT CTAATCCAAG AAGGTAACAT CGGTCTGATG AAAGCGGTAG ATAAGTTCGA ATACCGTCGT GGTTACAAGT TCTCGACTTA CGCAACGTGG TGGATCCGTC AGGCCATCAC TCGTTCAATC GCGGACCAAG CACGTACGAT TCGTATCCCG GTACACATGA TCGAAACGAT CAACAAGCTA AACCGTATCT CTCGTCAAAT GCTGCAAGAG ATGGGGCGTG AGCCATTACC GGAAGAACTG GCAGAGCGTA TGCAAATGCC AGAAGACAAG ATTCGTAAAG TACTGAAAAT CGCTAAAGAG CCAATCTCTA TGGAGACACC AATTGGTGAC GACGAAGATT CGCATCTAGG TGATTTCATC GAAGATACTA CGCTAGAACT ACCGCTAGAT TCTGCTACGG CAACGAGCCT GAAAATGGCA ACGAAAGACG TACTTGCAGG TCTAACGCCA CGTGAAGCAA AAGTACTTCG TATGCGCTTT GGTATCGACA TGAACACTGA CCACACTCTA GAAGAAGTTG GTAAGCAGTT CGACGTTACT CGTGAACGTA TCCGTCAGAT CGAAGCGAAA GCACTACGTA AACTTCGTCA CCCAAGCCGC TCAGAAACAC TGCGCAGCTT CCTAGACGAG TAA
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Protein sequence | MDQNPQSQLK LLVIKGKEQG YLTYAEVNDH LPAEIVDSEQ VEDIIQMIND MGIKVVETAP DADDLALNDD TNITDEDAAE AAAAALSSVE SEIGRTTDPV RMYMREMGTV ELLTREGEID IAKRIEEGIN QVQSSVAEYP GTIPYILEQF DKVQAEELRL TDLISGFVDP DADDTAAPTA THIGSELTES QLEEEDEEDV DDDEESDDDS DDSEEDVGID PELALEKFNQ LRSTYQNLQL AINEHGYESP KATVANELML DVFKEFRLTP KQFDHLVNEL RTAMDRVRTQ ERLIMKSAVE YGKMPKKSFI ALFTGNESSE AWLDEILASD KPYAEKIKRN EEEIRRSIAK LKMIEEETSL NVQNIKDISR RMSIGEAKAR RAKKEMVEAN LRLVISIAKK YTNRGLQFLD LIQEGNIGLM KAVDKFEYRR GYKFSTYATW WIRQAITRSI ADQARTIRIP VHMIETINKL NRISRQMLQE MGREPLPEEL AERMQMPEDK IRKVLKIAKE PISMETPIGD DEDSHLGDFI EDTTLELPLD SATATSLKMA TKDVLAGLTP REAKVLRMRF GIDMNTDHTL EEVGKQFDVT RERIRQIEAK ALRKLRHPSR SETLRSFLDE
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