Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_00391 |
Symbol | def |
ID | 5553807 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | + |
Start bp | 373968 |
End bp | 374486 |
Gene Length | 519 bp |
Protein Length | 172 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 640905886 |
Product | peptide deformylase |
Protein accession | YP_001443633 |
Protein GI | 156972726 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0242] N-formylmethionyl-tRNA deformylase |
TIGRFAM ID | [TIGR00079] peptide deformylase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTGTAT TACAAGTATT AACATTCCCA GATGATCGCC TGCGTACCGT TGCAAAACCT GTAGAAGAGG TGACACCTGA GATTCAAAAA ATCGTCGATG ACATGATTGA AACCATGTAC GACGAAGAAG GTATTGGCCT GGCTGCAACG CAGGTTGATA TCCACAAACG TATCGTAGTG ATTGATATTT CTGAAACTCG TGATGAGCCT ATGGTGCTTA TCAACCCTGA GATTCTAGAA AAGCGTGGCG AAGATGGCAT CGAAGAAGGC TGTCTGTCGG TACCAGGTGC GCGTGCACTT GTGCCTCGCG CTGCTGAAGT TACGGTTAAA GCGCTAGATC GCGATGGCAA AGAATACACC TTTGAAGCCG ACGATCTGCT AGCAATCTGT GTTCAACACG AACTAGACCA CCTAATGGGC AAACTGTTCG TGGATTACCT ATCGCCACTG AAGCGTAAGC GTATTCAAGA CAAGCTAGCG AAAATCAAAC GCTTTAACGA GAAACAGCAA AACGCTTAA
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Protein sequence | MSVLQVLTFP DDRLRTVAKP VEEVTPEIQK IVDDMIETMY DEEGIGLAAT QVDIHKRIVV IDISETRDEP MVLINPEILE KRGEDGIEEG CLSVPGARAL VPRAAEVTVK ALDRDGKEYT FEADDLLAIC VQHELDHLMG KLFVDYLSPL KRKRIQDKLA KIKRFNEKQQ NA
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