| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00205 |
|---|
| Symbol | |
|---|
| ID | 5553956 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio harveyi ATCC BAA-1116 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009783 |
|---|
| Strand | - |
|---|
| Start bp | 202571 |
|---|
| End bp | 204745 |
|---|
| Gene Length | 2175 bp |
|---|
| Protein Length | 724 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 640905701 |
|---|
| Product | lysine decarboxylase |
|---|
| Protein accession | YP_001443472 |
|---|
| Protein GI | 156972565 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGA GCGCCCTCAT TCGCCTTGGA GATGTCCAAA TGAATATATT CGCTATTTTG
AACCACATGG GTGTGTTCTT TAAAGAAGAG CCAGTTCGTC AACTTCACGC TGCTCTTGAG
AAAGCGGGCT ACGAAGTGGT TTACCCAGTA GATGACAAAG ACTTGATCAA AATGATTGAG
ATGAACCCAC GCATTTGCGG TGTGCTGTTC GACTGGGATA AATACTCACT AGAGCTATGT
GAACGTATTA GCCAAATCAA CGAAAAACTT CCTGTTCACG CATTTGCTAA TGAACAGTCT
ACTCTAGACA TTTCACTAAC AGACCTACGT CTAAACGTGA GCTTCTTCGA GTATGCTTTA
GGTATGGCTG ACGACATCGC TATCAAAATC AACCAAGCGA CAGAGGCATA CAAAGATGCC
ATCATGCCTC CATTCACTAA AGCGCTATTT AAATACGTGG AAGAAGGTAA ATACACCTTC
TGTACTCCAG GTCACATGGG TGGTACTGCA TTCCAGAAAA GTCCTGCTGG TAGTATCTTC
TACGATTTTT ACGGTCCAAA CACATTCAAA GCGGACGTAT CAATCTCAAT GCCTGAGCTA
GGTTCTCTAC TAGACCACTC AGGTCCACAT AAAGATGCAG AAGAATACAT TGCACGTACA
TTCAATGCGG ATAGCTCTTA CATCGTAACT AACGGTACGT CTACATCGAA CAAAATCGTT
GGTATGTACT CAGCGCCTGC AGGCAGCACA GTACTGATTG ACCGTAACTG TCACAAGTCT
CTGACTCACC TAATGATGAT GAGCGACGTG ACACCAATCT ACTTCCGCCC AACTCGTAAC
GCATACGGCA TTCTTGGTGG TATTCCACAA AGTGAATTCA GCCGTGATGT CATTGCAGAG
AAAGTGGCGA AAACACCAGG TGCAACAGCG CCAAGTTACG CAGTAGTGAC TAACTCAACT
TACGATGGCC TGCTGTACAA CACGCAATTC ATCAAAGAGT CGCTAGATTG TAAACACATT
CACTTCGACA GTGCTTGGGT GCCTTACACT AACTTCAACC CAATTTACGA AGGTAAATGT
GGTATGAGTG GTGAAGCGAT GCCAGGCAAA GTGTTCTACG AGACACAATC AACACACAAA
CTGTTGGCGG CATTCTCACA AGCTTCAATG ATTCACGTGA AAGGTGACTT TGATAAAGAA
TCTTTCAACG AAGCATTCAT GATGCACACT TCAACTTCAC CTCAGTACGG CATTGTTGCT
TCTACTGAAA CTGCAGCGGC AATGATGCGC GGCAACACTG GTAAGAAGTT GATGCAAGAT
TCTATCGATC GCGCAATTCG CTTCCGTAAA GAGATCAAAC GTCTAGAAGC AGAAAGCGAC
AGCTGGTTCT TCGATGTATG GCAACCAGAA AATATCGATA GCACTGAATG CTGGAAACTA
GACCCTAGCG ATACGTGGCA TGGCTTCAAG AACATGGATG ACAACCACAT GTATCTTGAT
CCAATCAAAG TAACGCTACT GACTCCAGGG ATGAATAAAG AAGGCGAACT AGAAGAATCA
GGTATTCCTG CTTCGCTGGT GGCTAAATTC CTAGACGAGC GCGGCATCGT GGTAGAGAAA
ACAGGTCCAT ACAACTTGTT GTTCCTATTC TCAATCGGTA TCGACAAATC AAAAGCAATG
CAATTGCTAC GCGGCCTAAC TGAATTTAAA CGTGGCTACG ACTTGAACCT AACCATCAAG
AGCTTCCTAC CTTCGCTATA CAACGAAGAC CCAAGCTTCT ATGAAGGTAT GCGCGTTCAA
GAACTAGCAC AAGCAATTCA CAACTTAACT AAGAAATACA ACCTACCAGA GCTAATGTAC
AAAGCGTTCG ATGTTCTTCC TGAAATGAAA GTAACACCAC ACGCAGCATG GCAAGAAGAG
CTTCGCGGTA ACGTAGAAGA AATCAAACTG GAAGAAATGG TTGGTCGCGT AAGTGCGAAC
ATGATCCTTC CTTATCCTCC AGGTGTGCCA CTAGTACTTC CTGGTGAAAT GGTGACTCAA
GAGTCTCGCC CTGTGCTGGA CTTCCTAGAG ATGCTTTGTG AGATCGGTGC GCATTACCCA
GGTTTCGAAA CCGACATCCA CGGTCTATAC CAACAAAAAG ATGGTAGCTA CACCGTAAAA
GTATTGAAGA ACTAG
|
|---|
| Protein sequence | MAKSALIRLG DVQMNIFAIL NHMGVFFKEE PVRQLHAALE KAGYEVVYPV DDKDLIKMIE
MNPRICGVLF DWDKYSLELC ERISQINEKL PVHAFANEQS TLDISLTDLR LNVSFFEYAL
GMADDIAIKI NQATEAYKDA IMPPFTKALF KYVEEGKYTF CTPGHMGGTA FQKSPAGSIF
YDFYGPNTFK ADVSISMPEL GSLLDHSGPH KDAEEYIART FNADSSYIVT NGTSTSNKIV
GMYSAPAGST VLIDRNCHKS LTHLMMMSDV TPIYFRPTRN AYGILGGIPQ SEFSRDVIAE
KVAKTPGATA PSYAVVTNST YDGLLYNTQF IKESLDCKHI HFDSAWVPYT NFNPIYEGKC
GMSGEAMPGK VFYETQSTHK LLAAFSQASM IHVKGDFDKE SFNEAFMMHT STSPQYGIVA
STETAAAMMR GNTGKKLMQD SIDRAIRFRK EIKRLEAESD SWFFDVWQPE NIDSTECWKL
DPSDTWHGFK NMDDNHMYLD PIKVTLLTPG MNKEGELEES GIPASLVAKF LDERGIVVEK
TGPYNLLFLF SIGIDKSKAM QLLRGLTEFK RGYDLNLTIK SFLPSLYNED PSFYEGMRVQ
ELAQAIHNLT KKYNLPELMY KAFDVLPEMK VTPHAAWQEE LRGNVEEIKL EEMVGRVSAN
MILPYPPGVP LVLPGEMVTQ ESRPVLDFLE MLCEIGAHYP GFETDIHGLY QQKDGSYTVK
VLKN
|
|---|
| |