Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VIBHAR_00085 |
Symbol | |
ID | 5555620 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio harveyi ATCC BAA-1116 |
Kingdom | Bacteria |
Replicon accession | NC_009783 |
Strand | - |
Start bp | 87518 |
End bp | 90010 |
Gene Length | 2493 bp |
Protein Length | 830 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 640905581 |
Product | ribonuclease R |
Protein accession | YP_001443372 |
Protein GI | 156972465 |
COG category | [K] Transcription |
COG ID | [COG0557] Exoribonuclease R |
TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases [TIGR02063] ribonuclease R |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGACA ACATTCCAAA CGATCCTTTC GCAGATCGTG AATCCAAAAA TTACGAAAAT CCAATCCCAA GCCGAGAGTT CATTCTTGAG TTTCTAGAAG AAGCAGGCGT ACCGATGAAT CGCAATGATT TGTTCGAAGC GCTGAAACTT AAAGGTGAAG AGCAGTACGA AGGTTTGCGT CGTCGACTGC GCGCAATGGA GCGTGATGGT CAGCTTGTGT TTACGCGCCG TCAGTGCTAT GCGTTACCAG AAAAACTCGA GATGGTGAAA GGTTACGTAA TTGGCCACAA AGATGGCCAT GGTTGGGTTC GTCCTGAAGG CAGTGTCGGC AAGGATAATG ACATTGTACT GCCGCATCAC CAGATGAAGC ACATCATCCA CGGTGACTAC GTGCTGGTGC AACCAACTGA CAACAGCAAG CGTGGTCGTC GTGAAGGTCG TCTTGTACGT GTTTTAGAAG AACGTAATAC GCAGATTGTG GGTCGTTTCT TCCTTGAATA CGGCTACTCA TACGTTGTGC CTGATGACTC TCGTATTAGC CAAGATATTT TGATCCCAAA TGAGCACAAA GCGGGTGCTC GTATGGGTAA CGTGGTCGTG ATTGAGATTA CTGATCGCGG CTCTCGCTCA CGTGGCATGA TGGGTAAAGT GGTTGAAGTC CTTGGCGAAA ACATGGCGCC GGGCATGGAA ACGCAAATTG CAATTCGTAC CCACCAAATT CCACACGATT GGCCAGAAGC GGTTGATAAG CAAATTGAAA ACCTGGGCGA AGAAGTTCCA GAAGAAGCGA AAGTAGGTCG TGTCGACCTG CGTGACTTAC CGTTGGTGAC CATCGATGGT GAAGACGCGC GTGACTTCGA TGACGCCGTT TACTGTGAGA AGAAAAAGAG TGGCGGTTGG CGCTTATGGG TTGCGATTGC TGACGTAAGT TACTACGTAC GTACAGACTC TGCGCTGGAT AAAGAAGCCA TCAACCGTGG TAACTCGGTG TACTTCCCAT CTCAAGTGGT GCCAATGCTA CCTGAAGTGC TATCAAACGG TTTGTGTTCA CTTAACCCAC AGGTTGATCG CTTGTGTATG GTGTGTGAGA TGACCATCTC TGACACTGGT AAGCTGTCAG GCTACAAACA CTACGAAGCC GTGATGAATT CGCACGCTCG TCTGACTTAC AACAAAGTGG GCGCGATTCT AGAAGGGGAT GAAGAACTAC GTATGCGTTA TCACGCTGTC GTTCCTCACC TTGAAGAGCT GCACGCGATG TACAAAATAC TTAAAGAAGC GCGTGATAAC CGTGGTGCGA TCGAATTCGA AACCGTTGAA GCTAAGTTTA TCTTCAACTC GGATCGTAAG ATTGAAAGCA TCGAGCCAGT GATTCGTAAC GACGCACATA AGATCATCGA AGAATGTATG ATCCTCGCGA ACATCGCTTC AGCGTCTTAT GTTGAGAAAG CGAAAGAACC AGCGTTGTAC CGTGTTCACG AATCTCCGGG TGAACTGCGT CTGCAAGGTT TCCGTGACTT CCTAAGTGAG TTAGGTCTGG ATCTGAAAGG TGGTCTAGAG CCATCACCAA CCGACTATGC CGATTTGGTA AAACAAATCG CAGAACGTCA GGACAAAGAG CTGATTCAAA CCATGTTGCT GCGCTCAATG AAGCAAGCGG TCTACAACGC AGACAATGCA GGCCACTTTG GTCTAGCGCT GAAACGTTAC GCGCACTTCA CGTCGCCAAT TCGTCGCTAC CCAGACTTGC TGCTTCACCG CGCAATCAAA TATCTGATTG CTAAAGAAGA AGGCCGTAAC CAAGATCGTT GGACACCAAC CGGCGGTTAC CACTACTCGT TTGACGACAT GGACTTCTAC GGTGAGCAAT GTTCAATGAC AGAGCGTCGT GCAGACGACG CAACTCGTGA AGTGGCTGAT TGGTTAAAGT GTGAATACAT GCAAGACCAT GTTGGCGACG AGTTGGATGG TGTTATTGCC AACGTGACCA GCTTTGGTTT CTTTGTTCGT CTGACTGAGC TGCATATTGA TGGCTTGGTA CACATTTCGA CGTTAGCGAA CGACTACTAC CAATTTGATC CTATTGGTCA AAGACTTATC GGTGAAAGCT TCGGTAACAT CTATCGCCTA GGCGATGCGG TGAAAGTAAA AGTGCTTGCG GTTAACTTAA ATGACAAGCA AATTGACTTT GAATTAATCG AAACAAGCCG TAAGCTACGC GGCAAAGGTA AGACTGCGAA GAAACGCGCA GCGGATGCCA AACGTAAAGC GAAAGAGAAA AAACGTGCGG CAACAAAAGG CGGCACTCGT GCAACACCTG CGATTGAACC AACCAAGCGA CCAGAGCCTG CCGTAGCAGA AAAGCCTCGC CCAAATGGAG CAAAACGCAG TGACACTGAA GGCGCTAAAA AGCCGAAAGT GAAAAAAGCA CGCAAGAAAA AGCCACACAG TAAGCCGAAG AAGACTAAGC GTACTAAGAG TGACGCAGAG TAG
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Protein sequence | MSDNIPNDPF ADRESKNYEN PIPSREFILE FLEEAGVPMN RNDLFEALKL KGEEQYEGLR RRLRAMERDG QLVFTRRQCY ALPEKLEMVK GYVIGHKDGH GWVRPEGSVG KDNDIVLPHH QMKHIIHGDY VLVQPTDNSK RGRREGRLVR VLEERNTQIV GRFFLEYGYS YVVPDDSRIS QDILIPNEHK AGARMGNVVV IEITDRGSRS RGMMGKVVEV LGENMAPGME TQIAIRTHQI PHDWPEAVDK QIENLGEEVP EEAKVGRVDL RDLPLVTIDG EDARDFDDAV YCEKKKSGGW RLWVAIADVS YYVRTDSALD KEAINRGNSV YFPSQVVPML PEVLSNGLCS LNPQVDRLCM VCEMTISDTG KLSGYKHYEA VMNSHARLTY NKVGAILEGD EELRMRYHAV VPHLEELHAM YKILKEARDN RGAIEFETVE AKFIFNSDRK IESIEPVIRN DAHKIIEECM ILANIASASY VEKAKEPALY RVHESPGELR LQGFRDFLSE LGLDLKGGLE PSPTDYADLV KQIAERQDKE LIQTMLLRSM KQAVYNADNA GHFGLALKRY AHFTSPIRRY PDLLLHRAIK YLIAKEEGRN QDRWTPTGGY HYSFDDMDFY GEQCSMTERR ADDATREVAD WLKCEYMQDH VGDELDGVIA NVTSFGFFVR LTELHIDGLV HISTLANDYY QFDPIGQRLI GESFGNIYRL GDAVKVKVLA VNLNDKQIDF ELIETSRKLR GKGKTAKKRA ADAKRKAKEK KRAATKGGTR ATPAIEPTKR PEPAVAEKPR PNGAKRSDTE GAKKPKVKKA RKKKPHSKPK KTKRTKSDAE
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