| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VIBHAR_00029 |
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| Symbol | |
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| ID | 5556079 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio harveyi ATCC BAA-1116 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009783 |
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| Strand | - |
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| Start bp | 25817 |
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| End bp | 27568 |
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| Gene Length | 1752 bp |
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| Protein Length | 583 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 640905525 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001443316 |
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| Protein GI | 156972409 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGAAAA TGAGACACGG ATTAACACTG ACACCAAGGA AGCTAAAAGG GCTCTTCTCT
TTATGGTTCT TTCTACTTTT AGCCCCTTTC GTCGCAGCAG AAGAAGTACA GTCTAACTCG
CTTAAGAGCA TCGACTTCCG TACGAACAAA GACAAAGACG CCGTGATTGT GGTTGAGCTC
GCATCACCCG CAGCGATTGT TGATATTAAA CGCGTACAAG AAGGCTTGAG TATCGACTTA
CTCAACACCT CCGTTAAAGA TGACCAGCTT TACCTACTTG ATGTGCAAGA TTTCTCGACA
GTTGTCGAGA GCGTTGAGGT ATTCCGCGAT ACTTCTACAA CACGTCTGGT GGCTTATATA
GATGAGGACT ATTCTCACGA CTACCGTCTT ACTGGTCGTT ATTTAGAGGT AAAGGTTGGC
AAGCTTAAAG CCAACGAAAA AGCGCCGGAT AAAAGCATTT TGGAAAAAGA AGGCAAGCTA
ATTTCGATTA ACTTCCAAGA CATTCCTGTG CGAAACGTGT TGCAACTTAT CGCCGACTAT
AACCAATTTA ACTTGGTCGT CTCTGACTCG GTTGAGGGTA ACTTGACCTT GCGTTTGGAT
GGTGTGCCTT GGCAGCAAGT ACTCGACATT ATCTTGCAAG TGAAAGGGTT AGATAAGCGT
GTTGATGGCA ATGTCATTCT CGTTGCACCA AAAGATGAAT TGGATCTGCG CGAGAAGCAG
CAACTCGAAA AGCAAAAGCT AGAGAAAGAG ATCGGTGAGC TTTCATCAGA GATCATCAAG
GTGAACTTCG CTAAAGCGTC AGACATTGCT GAGATGATCA ATGGGGAGGG CAACATCAGT
ATGCTTTCTG ATCGAGGCAG CATGACCATT GATGAGCGAA CAAACTCGTT ATTGATTCGT
GAGTTACCTG AGAATATTGA AGTGATTCGC GAGATCATAG AATCATTGGA TATTCCTGTA
AAACAGGTTC AGATTGAAGC GCGTATTGTG ACTATTAATG AAGGTAACAT GGACGAACTT
GGCGTTCGTT GGGGCTTCAC TTCCATTAAT GGCAGTCATA CTGTGGGTGG TTCAATTGAG
AATAACCTTG CGACAATCGG CCTGTACGAT GGCGGCGGTG ATGGTGAAGG TGATGACGGT
GGCAGCAGTG TGGGTATTGA CGACTTTCTC AACGTTAACC TTGCTGCGAC CAGTCCAAAT
GCGACCAGTA TTGCCTTCCA AGTTGCGAAG TTAGGTTCGG ATACCTTACT AGATTTGGAA
CTTTCGGCGC TGCAACAAGA ATCGAAAGCA GAAATTATTT CCAGTCCACG TTTGATCACC
ACGAATAAGA AGCCAGCTTA CATTGAGCAG GGTACCGAGA TCCCTTACCT TGAATCTTCT
TCCAGTGGTG CGACTTCTGT GACGTTCAAA AAAGCGGTAT TGAGCTTGAA AGTGACGCCA
CAGATTACGC CTGATAACCG TTTGGTGTTG GATTTGAGCG TTACGCAAGA CAGACCGGGC
CAAGTGGTAA AAACAGGCAC TGGTGAGGCG GTGGCGATCG ATACGCAACG TATTGGTACA
CAAGTTTTAG TTAATAATGG CGAGACAGTC GTGTTGGGCG GTATTTTTCA ACACAGCATT
ACAAACTCCG TCGATAAGGT GCCTTTATTA GGTGATTTGC CGCTGTTAGG TGCGCTTTTC
CGTCGAAGTT ACGAAAATGT CGGTAAAAGT GAACTACTGA TTTTTGTTAC ACCTAAAGTT
GTGATTCAGT AA
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| Protein sequence | MMKMRHGLTL TPRKLKGLFS LWFFLLLAPF VAAEEVQSNS LKSIDFRTNK DKDAVIVVEL
ASPAAIVDIK RVQEGLSIDL LNTSVKDDQL YLLDVQDFST VVESVEVFRD TSTTRLVAYI
DEDYSHDYRL TGRYLEVKVG KLKANEKAPD KSILEKEGKL ISINFQDIPV RNVLQLIADY
NQFNLVVSDS VEGNLTLRLD GVPWQQVLDI ILQVKGLDKR VDGNVILVAP KDELDLREKQ
QLEKQKLEKE IGELSSEIIK VNFAKASDIA EMINGEGNIS MLSDRGSMTI DERTNSLLIR
ELPENIEVIR EIIESLDIPV KQVQIEARIV TINEGNMDEL GVRWGFTSIN GSHTVGGSIE
NNLATIGLYD GGGDGEGDDG GSSVGIDDFL NVNLAATSPN ATSIAFQVAK LGSDTLLDLE
LSALQQESKA EIISSPRLIT TNKKPAYIEQ GTEIPYLESS SSGATSVTFK KAVLSLKVTP
QITPDNRLVL DLSVTQDRPG QVVKTGTGEA VAIDTQRIGT QVLVNNGETV VLGGIFQHSI
TNSVDKVPLL GDLPLLGALF RRSYENVGKS ELLIFVTPKV VIQ
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