| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004090 |
|---|
| Symbol | |
|---|
| ID | 8557830 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2751140 |
|---|
| End bp | 2752831 |
|---|
| Gene Length | 1692 bp |
|---|
| Protein Length | 563 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 646407192 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_003286715 |
|---|
| Protein GI | 262394861 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0450361 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGATAAAC CATGGCTTTC ACGTTATCCA AGTGACGTAC CTGAAACCAT TAATCCAGAG
CAATATGAGT CTTTGGTAGA AATGTTTGAG CAGTCTGTAC AAAAATATGC AGACCAACCG
GCATTCATGA ACATGGGCTC GGTTATGACC TTCCGTAAAT TGGAAGAGCG TAGTCGCGCA
TTCGCAGCGT ATCTGCAAAA CGAGTTAAAA CTGCAAAAGG GTGACCGTGT TGCTCTGATG
ATGCCAAACC TACTGCAATA CCCAGTGGCG TTGTTTGGTA TTTTGCGTGC AGGTTGTATC
GCCGTAAACG TTAACCCACT TTACACTCCT CGTGAACTTG AACACCAATT GAATGACTCA
GGTGCGACGA CGATTGTGAT TGTATCTAAC TTTGCGAACA CGCTAGAACA AATCGTCGAT
AAAACACCAG TTAAACACGT GGTGTTAACC AGCCTTGGTC AAATGCTGCC ACGAGCGAAA
GGTACGATTG TCGATTTTGT CGTGAAGTAC GTTAAGGGCA TGGTGCCTAA GTACGATTTA
CCTGGTGCAA TCTCAATGCG TCAGGCTCTA CGTAAAGGTC GTCGTCTACA ATACGTTAAA
CCGTTTATGT CCGGGGATGA CATCGCATTC CTGCAATACA CGGGCGGTAC GACAGGCGTC
GCGAAAGGCG CGATTCTTAC ACACCGTAAT ATGATTGCGA ACGTTTTACA GGCGAAAGGC
GCGTACGGGC CGGTTTTATC TCCAGGCCGT GAATTGGTCG TGACAGCGCT ACCGCTGTAT
CACGTATTTG CTCTTACCGT AAACTGTTTA CTGTTTGTCG AAATGGGTGG CCGTAACCTA
CTTATTACGA ACCCTAGAGA TATTCCAGGG TTCGTGAAAG AGCTACAAAA GCATCCGTTT
ACTGCGATTA CGGGCGTGAA CACCTTATTT AATGCTTTGA TCAACAACGA AGACTTCCAC
GAGTTGGATT TCAGTAACCT ACGTTTAGCC GTTGGCGGCG GCATGGCAGT GCAGCGCTCA
GTGGCAGAAA GATGGCAGAA GACCACGGGT TGTTACCTAC TAGAAGGCTA CGGCCTAACC
GAGTGTTCTC CATTGGTTGC GGCATACCCG CATGACCTTG TTGAATACAA TGGATCGATT
GGTCTGCCTG TGCCATCAAC AGAAGTTCGT ATTGTGGACG AAGAAGGCAA TGCGCTTCCG
AATACTGAAA CTGGTGAACT TCAAGTTCGT GGTCCTCAGG TTATGCAAGG CTACTGGCAA
CGACCTGAAG CAACGAAAGA TACGATCAAC GAAGACGGTT GGTTATCAAC GGGCGACATT
GTTAAGTTCG ATGACGAAGG CTTCCTGCAC ATCGTTGACC GTAAGAAAGA CATGATCTTG
GTATCAGGCT TTAATGTTTA CCCGAACGAA ATCGAAGACG TTGTAGCACT GCACGGCAAA
GTCCTTGAAG TGGCTGCTAT TGGTCAACCG CACGAAGTCT CTGGTGAATT AGTGAAGATC
TACGTCGTGA AGCGCGACCC GAGCTTGACC AAAGATGAAG TTATTACGCA TTGTCGTCAG
CACTTAACTG GCTACAAAGT ACCTAAGTTG GTTGAGTTCC GTGAAGACCT CCCTAAAACC
AATGTCGGTA AGATCTTGCG TCGTGTTCTG CGTGAAGAGA ACGACGCTGA ACTCGCGAAG
AAAAGCGCAT AA
|
|---|
| Protein sequence | MDKPWLSRYP SDVPETINPE QYESLVEMFE QSVQKYADQP AFMNMGSVMT FRKLEERSRA
FAAYLQNELK LQKGDRVALM MPNLLQYPVA LFGILRAGCI AVNVNPLYTP RELEHQLNDS
GATTIVIVSN FANTLEQIVD KTPVKHVVLT SLGQMLPRAK GTIVDFVVKY VKGMVPKYDL
PGAISMRQAL RKGRRLQYVK PFMSGDDIAF LQYTGGTTGV AKGAILTHRN MIANVLQAKG
AYGPVLSPGR ELVVTALPLY HVFALTVNCL LFVEMGGRNL LITNPRDIPG FVKELQKHPF
TAITGVNTLF NALINNEDFH ELDFSNLRLA VGGGMAVQRS VAERWQKTTG CYLLEGYGLT
ECSPLVAAYP HDLVEYNGSI GLPVPSTEVR IVDEEGNALP NTETGELQVR GPQVMQGYWQ
RPEATKDTIN EDGWLSTGDI VKFDDEGFLH IVDRKKDMIL VSGFNVYPNE IEDVVALHGK
VLEVAAIGQP HEVSGELVKI YVVKRDPSLT KDEVITHCRQ HLTGYKVPKL VEFREDLPKT
NVGKILRRVL REENDAELAK KSA
|
|---|
| |