| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_004089 |
|---|
| Symbol | |
|---|
| ID | 8557829 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 2749942 |
|---|
| End bp | 2751108 |
|---|
| Gene Length | 1167 bp |
|---|
| Protein Length | 388 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 646407191 |
|---|
| Product | ribonuclease D |
|---|
| Protein accession | YP_003286714 |
|---|
| Protein GI | 262394860 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0349] Ribonuclease D |
|---|
| TIGRFAM ID | [TIGR01388] ribonuclease D |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.0000003136 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | unclonable |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGAAT GCCAGCGTTT TGCTGGCATT TTTTATAGCG AGAAGTATGT GAATTATCAA
ATTATTACCA AAAACAAAGA TCTAGAAGAA GTTTGCATTC ACGCCCGAGA GGCAGATGTA
GTGATGCTGG ATACCGAATT CGTCCGTATT CGCACTTTCT ACCCGCAGTT AGGTCTGATT
CAGCTTTTCG ATGGTAATCG CCTCTCGCTG ATTGATCCGA CCGAATTAAC GGATATGACG
CCGTTCGTAG CGCTATTAAA AGATACTTCT GTGCTAAAAG TGCTGCACGC CTGCGGTGAA
GATTTAGAAG TTTTCCAAAA CGCATTTGGT TGTACGCCGT TCCCTATGGT AGATACACAG
TTGATGGCGG CCTTTCTTGG CCACGGTCTA TCAACAGGCT TCGCATCGCT GGTGGAAGAA
TATTTAGGCG TAGAGCTCGA CAAAAGTGAA TCACGTACTG ACTGGATGGC TCGACCGTTG
ACGCAAAAGC AATTAGATTA TGCTGCTGCA GACGTGCATT ACTTGTTACC GTTATACGAA
AAGCTGCTCG ATAAGGTGAC GCAAGCAGGT TGGTGGGAAG CCGTACAACA AGAAAGTGAT
TTGTTGGTTT CAAAACGAAT TCGCGTCACT AATGAGGAGA ATGCCTACCT TGATATTAAA
GGTGCTTGGC AGTTAAAACC TTCTGAACTG GCGATTTTAA AGCCATTGGC GATGTGGCGT
TATCGTGAAG CAATCAAACG AGATTTAGCG CTGAACTTTA TCTTCAAAGA AGGTGACCTA
TTAACAGTCG CTCGTCTTGG CTTAACTAAC TTTAAGAAGA TGGAAGCGGA AGATATTGAT
ATCCGAGCGA TTAACCGCCA TGGCGCGAAG ATTGCCGCTA TTGTTAAACA AGCGAAGCAA
ACACCTTCTG AAGAGTATCC AGCAAAAATT GAACGCTTAA TGGATTATCC AGGTTACAAA
CAAGTCTTCA AAAATATGAA AGACATAGTG AAATCGGCGT CGCAGAAGTC TGGCTTAGCG
ACGGAGTTCC TTGCTTCTAA AAAGCAGATT AATCAGCTGA TCAGTTGGGT GTGGAAAAAA
GATTGCGATC CAGAAGTGTT GCCTGACTTG ATGCAGGGCT GGCGCTTGGA CCTGCTCGGC
GACAAGATGA ACAAAGCATT AAAGTAA
|
|---|
| Protein sequence | MIECQRFAGI FYSEKYVNYQ IITKNKDLEE VCIHAREADV VMLDTEFVRI RTFYPQLGLI
QLFDGNRLSL IDPTELTDMT PFVALLKDTS VLKVLHACGE DLEVFQNAFG CTPFPMVDTQ
LMAAFLGHGL STGFASLVEE YLGVELDKSE SRTDWMARPL TQKQLDYAAA DVHYLLPLYE
KLLDKVTQAG WWEAVQQESD LLVSKRIRVT NEENAYLDIK GAWQLKPSEL AILKPLAMWR
YREAIKRDLA LNFIFKEGDL LTVARLGLTN FKKMEAEDID IRAINRHGAK IAAIVKQAKQ
TPSEEYPAKI ERLMDYPGYK QVFKNMKDIV KSASQKSGLA TEFLASKKQI NQLISWVWKK
DCDPEVLPDL MQGWRLDLLG DKMNKALK
|
|---|
| |