Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003994 |
Symbol | |
ID | 8557730 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 2640091 |
End bp | 2643552 |
Gene Length | 3462 bp |
Protein Length | 1153 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646407092 |
Product | transcription-repair coupling factor |
Protein accession | YP_003286619 |
Protein GI | 262394765 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.239612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACAAAAG CAACGATTCT TTCCGTCACC AATCCTTCTG AGCGTGGCGA CAAAAAACAG CTAGGTAATT TACCGGGCGC GGCTCTACCT CTAGCTATTG CTGAGCTAGC CAAGCAGCAT TCGAGTCACT CGCTACTCAT CGTGCCTGAC CCGCAAATCG CTTTAAAGCT TCAAGCGGAG ATTGAACAAT TCACCGACCA AACAGTAAGC CTGTTCCCTG ATTGGGAAAC GCTGCCTTAC GATAACTTTT CTCCGCATCA AGAAATCATC TCTGAACGTA TCGCGCGCCT ATACCAACTG CCAAGCCAAC GTAATGGCAT AACCATCGTC CCGGTCAGTA CAGTATTGCA ACGCCAATCG CCACGTGATT TTCTGTTGCA ACACACTTTA ATGGTGAAAA CTGGTGATCG ACTCTCGCTT GAGAAACTAC GTGTACAACT TGAAAATTCG GGCTACCGCC ACGTAGACCA AGTATTTGGG CCAGGTGAAT ACGCGAGCCG TGGGTCGATT CTGGATCTCT TTCCTATGGG CAGCGATGAC CCGTATCGCA TCGACTTCTT TGATGATGAA ATAGATACCA TTCGCACGTT TGATCCAGAG AACCAACGCT CTATCGACGA TATTCAGCAA ATCCAATTGC TGCCTGCGCA TGAGTTCCCA ACCACTAAAG AAGCGATTGA GGATTTTCGT ACACGTTGGC GCACCCAATT TGAAGCACGC CGAGAGCCAG AGTCGATCTA CATGCAAGTG ACCAAAGGCA CTTGGCCCCC GGGTATTGAG TATTGGCAAC CGCTGTTTTT TGACCATACC GAGACTTTAT TTGAATATTT GCCAGAAGAC TCTCAAGTCA TCACATATGG TGATATTGAA TCTGCGGTCG ATACTTTCTT AACCGATGTC GAATATCGGT ACGACCAGAA AAAAGTTGAT CCACTACGTC CTCTTTTGAC TCCTGAACAA CTTTGGCTGA AAAAAGACGA ACTCTTCAGC CAACTAAAAC AGCTCCCTAT GGCTCAATTG AGCCTAGAGA AAGTGGTTAA GCGTGCTGGT CGTCAAAACC TACCAGTACA ATCGTTAGCC GAGCTTGGCG TTCAGCAACA AAATAAAGAA CCGCTTTCGC GTCTTCGTCA ATTCAGTGAG CAATTCAGCG GCAAAATTGT TTTCTCGGTA GAGTCAGAAG GTCGTCGTGA AGCACTAACG GAACTGTTGC AAGGCATCAA AGTTCGCCCA GTCGTACATG GCTCACTTTA CCAAGCTCTA GATTCGGGTG ACCGCTTCAG TTTGATCTTA GGCGCTGCAG AGCATGGTTT CATTCACGAA GAGCTGAACT TCGCTCTGAT CTGTGAAAGT GATCTACTTG GTGACCGCGT TATCCAGCGA CGCCGCAAAG ATAAAAAAGC AGTCAACAGT GACACCGTTA TTCGCCACCT TGCGGAACTA AAACCCGGTC AACCCGTGGT TCATATTGAT CACGGTATTG GCCGCTACAT CGGTTTACAA ACACTTGAAG CCGGTGGCAT GAAAACGGAA TACGTCACCC TTGAGTATCA AAACGATGCC AAGCTCTACG TACCAGTTTC ATCACTAAAC CTTATTAGCC GTTATTCAGG CGGTGCTGAA GAAAGTGCAC CACTGCATAA ATTGGGTGGC GAGGCTTGGG CAAAAGCACG TCGTAAAGCG GCAGAAAAAG TGCGTGATGT CGCGGCCGAG TTGCTGGATG TTTACGCTAA ACGAGAATTA AAACCAGGCT TCAAATTTGA GCTAGATCGT GGGCAATACG CAACGTTTAA AGCAACGTTC CCATTTGAAG AAACGGATGA CCAAGCGATG GCCATCAATG CCGTCTTGTC AGACATGTGC CAAGCAAAAG CGATGGATCG CCTAGTGTGT GGTGACGTGG GCTTTGGTAA AACAGAAGTC GCTATGCGCG CAGCATTTGT CGCAACGGAT AACAGTAAAC AGGTCGCCGT TCTCGTACCG ACAACTCTGC TTGCTCAGCA GCATTTCGAA AACTTCCGTG ACCGTTTTGC CAACTTACCA ATCCGAGTTG AAGTACTGTC TCGTTTTAAA TCGGCCAAAG AACAAAAAGT CATTTTGCAA GACGTTGCAG ATGGTAAAGT CGATATTGTC GTTGGTACGC ATAAGCTGCT TTCGAGCGAC ATTAAATTCA AAGATTTAGG TTTGTTGATC GTTGATGAGG AACACCGCTT CGGAGTTCGT CAAAAAGAAA AAGTCAAAGC AATGCGTGCG GATGTGGATA TTCTTACCCT CACCGCAACA CCAATTCCAC GTACACTGAA TATGGCAATG AGTGGCATGC GCGATCTGTC GATCATCGCG ACACCTCCAG CGCGTCGTTT AGCCATCAAA ACCTTTGTTC GTCAAAGAGA AGAATCTGTG GTCCGTGAGG CGGTACTGCG TGAAATCATG CGTGGTGGTC AGGTTTACTT CCTGCACAAT CAGGTAGAGA CTATCGAGAA AACCGCGGAA GACTTGCAAA AGCTTATTCC TGAAGCACGA ATTACCGTGG CACATGGTCA AATGCGTGAG CGCGAACTAG AGCGCATCAT GAATGATTTC TACCACCAGC GCTTTAATGT GTTGGTGTGT ACAACTATTA TCGAGACCGG TATCGACGTA CCAACGGCGA ATACCATTAT TATGGATCGT GCAGACAACC TTGGTTTAGC GCAACTGCAC CAATTGCGTG GCCGTGTTGG ACGCTCTCAT CATCAAGCCT ATGCTTACTT ATTAACGCCA CATCCAAAAG CCATGACCAA AGATGCTATC AAGCGTCTTG ATGCGATTGC TTCACTGGAA GACTTAGGCG CAGGCTTTAC TCTAGCAACT CACGACTTGG AAATCCGTGG GGCTGGTGAG CTGCTTGGTG ACGAGCAAAG TGGGCAAATT CAATCGGTTG GTTTTACACT GTACATGGAA ATGCTGGAAC AAGCAGTCCA AGCATTGAAA GAAGGTAAAG AACCTTCTTT GGACGAGCTG CTTCGAGAAC AAACTGAAGT TGAAATGCGA ATCCCAGCGC TCTTGCCAGA CGATTACATC CCGGATGTGA ATACACGACT GTCGATGTAC AAACGTATTG CGAGCGTTAC GAGTGGTGAA GAACTCTCAG AGCTCAAAGT GGAACTTATC GATCGATTTG GACTGCTTCC AGACGCGACG AAGAACTTAC TTGCTGTCTC AGAATTGAAA ATTTCGGCTG GTAGCCTAAA AGCGAAAAAG ATAGAAGCCC ATGATAAGGG TGGATTTATC GAGTTTTACC CTGATGCTGA CATAAATCCA GCGTATTTGG TTAAACTGCT GCAATCACAG CCGCAAAAAT TTGCAATGGA AGGTCCAACT AAGTTCAAGT TTAGCGTACC ATTGGTGGAC CGACGTAAAC GCATTCAGTT TGTTCAAGAC TTACTGAATG ATTTTAAACA GAATTTATTA CCAACGAGCT AA
|
Protein sequence | MTKATILSVT NPSERGDKKQ LGNLPGAALP LAIAELAKQH SSHSLLIVPD PQIALKLQAE IEQFTDQTVS LFPDWETLPY DNFSPHQEII SERIARLYQL PSQRNGITIV PVSTVLQRQS PRDFLLQHTL MVKTGDRLSL EKLRVQLENS GYRHVDQVFG PGEYASRGSI LDLFPMGSDD PYRIDFFDDE IDTIRTFDPE NQRSIDDIQQ IQLLPAHEFP TTKEAIEDFR TRWRTQFEAR REPESIYMQV TKGTWPPGIE YWQPLFFDHT ETLFEYLPED SQVITYGDIE SAVDTFLTDV EYRYDQKKVD PLRPLLTPEQ LWLKKDELFS QLKQLPMAQL SLEKVVKRAG RQNLPVQSLA ELGVQQQNKE PLSRLRQFSE QFSGKIVFSV ESEGRREALT ELLQGIKVRP VVHGSLYQAL DSGDRFSLIL GAAEHGFIHE ELNFALICES DLLGDRVIQR RRKDKKAVNS DTVIRHLAEL KPGQPVVHID HGIGRYIGLQ TLEAGGMKTE YVTLEYQNDA KLYVPVSSLN LISRYSGGAE ESAPLHKLGG EAWAKARRKA AEKVRDVAAE LLDVYAKREL KPGFKFELDR GQYATFKATF PFEETDDQAM AINAVLSDMC QAKAMDRLVC GDVGFGKTEV AMRAAFVATD NSKQVAVLVP TTLLAQQHFE NFRDRFANLP IRVEVLSRFK SAKEQKVILQ DVADGKVDIV VGTHKLLSSD IKFKDLGLLI VDEEHRFGVR QKEKVKAMRA DVDILTLTAT PIPRTLNMAM SGMRDLSIIA TPPARRLAIK TFVRQREESV VREAVLREIM RGGQVYFLHN QVETIEKTAE DLQKLIPEAR ITVAHGQMRE RELERIMNDF YHQRFNVLVC TTIIETGIDV PTANTIIMDR ADNLGLAQLH QLRGRVGRSH HQAYAYLLTP HPKAMTKDAI KRLDAIASLE DLGAGFTLAT HDLEIRGAGE LLGDEQSGQI QSVGFTLYME MLEQAVQALK EGKEPSLDEL LREQTEVEMR IPALLPDDYI PDVNTRLSMY KRIASVTSGE ELSELKVELI DRFGLLPDAT KNLLAVSELK ISAGSLKAKK IEAHDKGGFI EFYPDADINP AYLVKLLQSQ PQKFAMEGPT KFKFSVPLVD RRKRIQFVQD LLNDFKQNLL PTS
|
| |