| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003894 |
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| Symbol | |
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| ID | 8557629 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2525120 |
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| End bp | 2528281 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646406991 |
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| Product | acridine efflux pump |
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| Protein accession | YP_003286519 |
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| Protein GI | 262394665 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.341931 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGAT TTTTTATCGA TCGTCCGGTA TTTGCTTGGG TTCTCGCAAT TCTCACGATG
TTGGCGGGGG TAATGTCATT ATTCAATTTA CCCGTCTCGC AATACCCAAC GATTTCACCG
ACAACGATCA CCATCAGTGC TCGTTATCCA GGTGCATCAG CGAAAACCGT TGAAGACTCG
GTAACGCAGG TTATCGAGCA AAATATGACG GGATTAGATT ATCTTCGCTA CCTATCATCG
AGCAGTGATG CATTCGGTAA TGCGACAATT ACCCTGACGT TTGATAGCGA AGCTGATCCT
GATATCGCGC AAGTACAGGT GCAGAACAAG CTGCAATTGG CATTGACATC ATTGCCGATG
GAAGTACAAA ACCAAGGTAT CGTCGTGAAT AAATCCAACA CGGCGTTTCT CATGGTGGTG
GCAGTTTATT CTGAAGATCC TGACTTTACA GAAAACGATA TCGGCGACTT TGTTGTAACG
AATATTCAAG ACCCGATAAG TCGTGTAACT GGCGTAGGAC AAGTACAGGC GTTTGGTGCG
CAGTATGCGA TGCGAGTTTG GCTGGATCCA TTTAAGCTTA CGCAGTTCAA CTTGACCGCA
ATCGATGTAG CAAATGCTAT CAGTGAACAG AACGCGCAAG TTTCTTCAGG TCAACTTGGT
GCAGCACCTG CGCAGGAAGG TCAGCTGTTG AATGCAACGA TTTCGTCTGC AAGTCGTTTG
AGCAGTGTGG AAGAGTTCCA AAACATCATT CTTAAGTCTG ATGCCAGTGG TTCGAATGTT
TATTTGAAAG ATGTAGCTCG TGTTGAACGT GGTGCAGAAA GTTACGATAT TCGAGGCCAA
TATAATGGCT TCCCAGCATC GGGGTTAGGT ATTTCATTAG GTACTGGCGC AAACGCGCTT
GAGACAGCTA ATGCGGTGAA AGAGCGTTTA GAACAACTGA GTGCTACGTT CCCAGAAGGG
TTGCAGATTG CTTACCCATT TGAAACAACG CCATTCGTCA AAGCCTCGAT TCAAGAAGTG
GTTAAAACGC TATTAGAAGC CATTCTTCTT GTGTTCTTAA TCATGTACCT GTTCTTGCAG
AACTTCCGTG CGACGATCAT TCCAACGATC GCAGTGCCTG TCGTACTGCT CGGCACCTTC
GCTATTTTGT ACGCGACTGG ATTTAGCGTA AACACGTTAA CCATGTTCGC GATGGTTCTG
GCTATCGGTT TGCTAGTGGA CGATGCCATC GTTGTGGTGG AAAACGTCGA GCGTGTGATG
CATGAGGATG GGTTAGAGCC AAAAGAAGCG ACCAAAAAAT CGATGGGGCA GATTACTGGT
GCCCTGATTG GTGTGGGTCT GACGCTTTCT GCGGTATTCG TCCCTATGGC GTTTATGTCT
GGTTCTACAG GGGTTATTTA CCGTCAGTTC TCGATAACGA TTGTGGCGGC GATGACACTT
TCAGTTTTGG TAGCGATAAT TCTGACTCCA GCATTATGTG CAACATTACT GAAAAAAGGC
GATGCTGAGC TTCTAGAAAA GAAAGGCTTC TTTGGCTGGT TTAACCGCAA GTTTGATGCG
ATGACAGCTG GCTATGAAAC CGGCGTTGCT AAACTCCTCA AGCGCACAGG TCGTATGTTG
GTTGTATTCT TGGCAATGAG TGCAGGTGCG GGCTGGCTGT TTATGAACCT TCCGACGTCA
TTCTTGCCGG ATGAAGACCA AGGCACGGTA TTCTCAATGG CCATTTTGCC GCCTAACTCA
ACGCAAGAGC AGACGGAAAA AACACTTGAG AAAATGCGCG ACTTTTACCT TGTGGATGAG
AAAGACAACG TGAAATCCGT CTTCTCCGTT GCGGGCTTTA GTTTTGCAGG CCAAGGCCAA
AACATGGGGA TGGCCTTTAT TGGTCTGAAA GATTGGTCAG AGCGTGAAGC GCCGGGTGCT
GATGCAGCTT CCATTACTGG TCGAGCGATG GGGTACTTCT CAACCATCAA AGAAGCACTG
GTGTTTGCAT TTGCACCTCC TGCGATTCAA GAATTGGGTA ACTCGACAGG CTTTGATTTC
TATCTTCAAG ATTCGTTGAA CAAAGGTCAC GACGCATTAG TCGCTGCGCA AGGTCAACTG
CTTGGCATGG CTGCACAAAA CCCGAAACTT GTCGGTGTTC GTCCGAACGG CCAAGCAGAT
GCGCCAATGT ACAAAGTGAA CATTGACCAC GTTAAACTGC GTGCTCTGGA TGTTAGCATT
AATGACGTCA ACCAAATCCT GTCAGCGGCA TGGGGCGGAG CGTACATTAA CGACTATATT
GATCGCGGTC GAGTGAAAAA AGTCATGATG CAAAGTGATG CGGAATACCG TATGCAGCCA
AAAGACTTCG ATTCGTGGTA CGTGCGTAAC TCAAAAGGTG AGATGGTGCC TTTCTCTGCC
TTTGCGAGCG GAGAGTGGAC GTATGGTTCA CCTCTTTTGC AGCGTTTTGA TGGTTTGCCA
GCGATGAATA TCCAAGGCGG CGCAGCTCCT GGCGTCAGTA CTGGTGAAGC CATGGCAGAA
ATTGAAGCAA TGGTAGAAAA ATTACCAGAA GGCTTTACGG TGAACTGGAA TGGTATTTCG
TATGAAGAGC GCCTTTCCGG AAACCAAGCG CCAATGTTAT ATGCGCTGTC TATCCTCGTC
GTATTCTTAG TTCTCGCCGC TTTGTATGAA AGTTGGTCAG TACCTTTCGC CGTGGTGTTA
GTTGTGCCTC TTGGTGTGCT TGGTGCTGTG CTCGCGGTAA TGACGCGAAG TATGGACAAC
GATGTATTCT TCCAGGTGAG CTTATTAACG ACGGTCGGCT TGGCAACTAA AAACGCCATT
CTGATTGTTG AGTTTGCGAA AGATTACTAC GAGAAAGGCG CTGGCCTTAT CGAAGCTACC
CTGCATGCCG TTCGTGTTCG TCTGCGCCCT ATTATTATGA CATCGCTTGC CTTTGGTCTA
GGTGTAGTAC CGCTTGCTAT CAGCTCTGGC GTGGGCTCAG CAGGTCAAAA TGCGGTAGGT
ACTGGTGTAC TTGGTGGCAT GATCAGTGCG ACAATCTTAG GTATATTCTT TGTGCCAATC
TTCTTTGTGG TGGTTGAGCG ATTGTTTGAT CGACGTGCGA GAAAAGAATC GGAGGCAGAG
TTGTCTGAGA CTAATCCTAA ACCAGCTCAG CAAAGCGAGT AA
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| Protein sequence | MARFFIDRPV FAWVLAILTM LAGVMSLFNL PVSQYPTISP TTITISARYP GASAKTVEDS
VTQVIEQNMT GLDYLRYLSS SSDAFGNATI TLTFDSEADP DIAQVQVQNK LQLALTSLPM
EVQNQGIVVN KSNTAFLMVV AVYSEDPDFT ENDIGDFVVT NIQDPISRVT GVGQVQAFGA
QYAMRVWLDP FKLTQFNLTA IDVANAISEQ NAQVSSGQLG AAPAQEGQLL NATISSASRL
SSVEEFQNII LKSDASGSNV YLKDVARVER GAESYDIRGQ YNGFPASGLG ISLGTGANAL
ETANAVKERL EQLSATFPEG LQIAYPFETT PFVKASIQEV VKTLLEAILL VFLIMYLFLQ
NFRATIIPTI AVPVVLLGTF AILYATGFSV NTLTMFAMVL AIGLLVDDAI VVVENVERVM
HEDGLEPKEA TKKSMGQITG ALIGVGLTLS AVFVPMAFMS GSTGVIYRQF SITIVAAMTL
SVLVAIILTP ALCATLLKKG DAELLEKKGF FGWFNRKFDA MTAGYETGVA KLLKRTGRML
VVFLAMSAGA GWLFMNLPTS FLPDEDQGTV FSMAILPPNS TQEQTEKTLE KMRDFYLVDE
KDNVKSVFSV AGFSFAGQGQ NMGMAFIGLK DWSEREAPGA DAASITGRAM GYFSTIKEAL
VFAFAPPAIQ ELGNSTGFDF YLQDSLNKGH DALVAAQGQL LGMAAQNPKL VGVRPNGQAD
APMYKVNIDH VKLRALDVSI NDVNQILSAA WGGAYINDYI DRGRVKKVMM QSDAEYRMQP
KDFDSWYVRN SKGEMVPFSA FASGEWTYGS PLLQRFDGLP AMNIQGGAAP GVSTGEAMAE
IEAMVEKLPE GFTVNWNGIS YEERLSGNQA PMLYALSILV VFLVLAALYE SWSVPFAVVL
VVPLGVLGAV LAVMTRSMDN DVFFQVSLLT TVGLATKNAI LIVEFAKDYY EKGAGLIEAT
LHAVRVRLRP IIMTSLAFGL GVVPLAISSG VGSAGQNAVG TGVLGGMISA TILGIFFVPI
FFVVVERLFD RRARKESEAE LSETNPKPAQ QSE
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