| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003600 |
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| Symbol | |
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| ID | 8557333 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2198898 |
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| End bp | 2201024 |
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| Gene Length | 2127 bp |
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| Protein Length | 708 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 646406695 |
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| Product | TPR domain protein |
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| Protein accession | YP_003286225 |
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| Protein GI | 262394371 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
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| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.210834 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAATGA AACATGCAAA CTCAGAATCT GTTCAAGGTG ATTTTGATAA CCGCACAGTG
ACGCATGATG GGCAACCCAA CCGTTTTTTT AGACAAGGCG AGGAGTATTG GGTCAATATT
CAAGGCCCTG ATGGTGAATG GCATGATTAT AAAATTAGCT ACACATTTGG CTGGGAACCG
TTACAGCAAT ATATGGTGGA GTTTGAAGAC GGTCGTGTAC AGCTCATTCC TTTTGCGTGG
GATTCAAGGA CGAAATCGGA AGGTGGTCAG CGCTGGTTTC ACCTCTATCC AGAGACAACA
ACGACAGATG AGTTTTACTG GACTAACACT GGGCAAAATT GGAATTTCAT GTGTGCAGAC
TGTCATTCGA CCAATTTAAA GAAGAACTAT GAAGCAATCA AAAATACCTA CAACACGTCT
TGGTCCGAGA TCAATGTTGG TTGTGAAGCG TGTCATGGCC CTGCAAGTGG ACACATCGAG
TTGGCGAAAA AATCCGCATC TACAGGAGGC TCTTTCGATA CAGATAGTCA CTATGGTTTT
GACCGAAATT TATCTAAAGC GGTAACCGAG TGGGTATTTG AGAAGGGCCA CAGAACGTTA
CAACCAAAAG CAATCGCAGA AACAAATCAA GTTCAGACGT GCGCACAATG TCACAGCCGT
CGAACGCAGT TGAATGAGAC AGGTGATCAC ATTCAAGGCT CATTTTTCGA TAAATATCGG
TTAAGCCTGA TCACTCCAGA ACTCTACTAC CACGATGGCC AAATTTACGA TGAAGACTAT
GTTTACGGTT CATTTCTTCA GTCTGAAATG GCTGAAAAAG GCGTAACATG CACCAATTGC
CACGATCCTC ATTCGGCAAA ACTAAACATC CCAGAAGAGG CGGTATGTTC ACAATGTCAT
ATTGCGTCAG AATATACCCC AGAAAACCAC ACCTTCCATG AAGCGGGAGC CAAAGCGTCA
CAATGCACGA CTTGTCACAT GCCAGAAACG ACTTATATGC AAGTCGATCC TCGTAGAGAC
CACAGTTGGC ACGTACCTAG ACCTGACTTG AGTAAACACA TCGACACGCC TAATGTATGT
GCGTCTTGTC ATGAGGATAA GAGTAACCAG TGGGCGGATG CGCAGATAGC CGAATGGTTT
CCTCACTCTC AATACCGCAA TCAACAACAC TTTGCTGTCG CGTTTTATGC CGATGCAATT
GGGCACAAAG GGGCGGCGAA TGCTCTGGCT TACTCTGCTC AGGATTCATC ATTAAAAGAC
ATCATACGAG CTTCTGCATT AGAGCGAATG GGCGGCAATA CTGACCAAAA TACGACTGTT
TCGCTTGCAA GGGCCGTTAA AAATGAGAAT GAAATGATTA GACTCGGCGC AGTCGCGGGC
TCGTCTGGTT ATGAGTTTCA TGATCGATGG CGAATTTTAG AACCACTGCT GGATGATCCC
GTACTTTCAG TGAGGGCGGA GGCGGCTTCG GTATTAGTGA CCAGCTATGC GCAAATGACG
CCGTTACAAA AAGATAGGAT TCAACCACCG CTTGAAGAGT ACATGGACAT TCAAAAGTTT
AACGCCGATC GTGGTTTCGG CAGAACCAAT TTGGCAAATG TATACCGCAG CTTAGGCGAA
ATCGATAAGG CAATTGCGTT ATACCAAGAA GCGATAAGTA TCGAGCCTTA TTTCGAAAAT
AGTTACGTGA ATTTATCGGA CCTGTATAGA CGCCTTGGGA AAGAAAAAGC TGCGCTCTCG
GTGTTACAAC AAGGGATGAA AGCTCAGCCT AAATCCAGCT CATTACCTTA CAGTGCCGGT
CTTTCTTTGT TACGCCAAGG CAAGGAAGAT GAGGCCAAAG CTCTACTTAA ACATGCCGCA
GAACTAGGAA AGACAAACGC TCACTACTGG TATGTTTATG GTCTAGCTTT AGAAAAAAGT
GAAGTTCTGG AAGCCAGTAA GGCATTGCAG ACTGCGTTTA AAGTTGGTGG GAACCCTCAA
CATTTATATG CTCAATGCGA AGTTCTAGCG AGAAATCATA AAAAAGGTGC TGTCGCTTTT
GCTTTCGATA GGTGTCTAAA AGAGCTGAGT AATTATGCTC CTAAGCAGGC TATTGATCAG
CTGAAAGCAT CTATTGCGAA TCTGTAG
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| Protein sequence | MAMKHANSES VQGDFDNRTV THDGQPNRFF RQGEEYWVNI QGPDGEWHDY KISYTFGWEP
LQQYMVEFED GRVQLIPFAW DSRTKSEGGQ RWFHLYPETT TTDEFYWTNT GQNWNFMCAD
CHSTNLKKNY EAIKNTYNTS WSEINVGCEA CHGPASGHIE LAKKSASTGG SFDTDSHYGF
DRNLSKAVTE WVFEKGHRTL QPKAIAETNQ VQTCAQCHSR RTQLNETGDH IQGSFFDKYR
LSLITPELYY HDGQIYDEDY VYGSFLQSEM AEKGVTCTNC HDPHSAKLNI PEEAVCSQCH
IASEYTPENH TFHEAGAKAS QCTTCHMPET TYMQVDPRRD HSWHVPRPDL SKHIDTPNVC
ASCHEDKSNQ WADAQIAEWF PHSQYRNQQH FAVAFYADAI GHKGAANALA YSAQDSSLKD
IIRASALERM GGNTDQNTTV SLARAVKNEN EMIRLGAVAG SSGYEFHDRW RILEPLLDDP
VLSVRAEAAS VLVTSYAQMT PLQKDRIQPP LEEYMDIQKF NADRGFGRTN LANVYRSLGE
IDKAIALYQE AISIEPYFEN SYVNLSDLYR RLGKEKAALS VLQQGMKAQP KSSSLPYSAG
LSLLRQGKED EAKALLKHAA ELGKTNAHYW YVYGLALEKS EVLEASKALQ TAFKVGGNPQ
HLYAQCEVLA RNHKKGAVAF AFDRCLKELS NYAPKQAIDQ LKASIANL
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