| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003519 |
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| Symbol | |
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| ID | 8557252 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 2105196 |
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| End bp | 2106038 |
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| Gene Length | 843 bp |
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| Protein Length | 280 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 646406614 |
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| Product | diguanylate cyclase (GGDEF domain) with PAS/PAC sensor |
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| Protein accession | YP_003286144 |
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| Protein GI | 262394290 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000133532 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGTCAT ACAGTGGCGT TCTGTCACAA GAAATCCTTG GCCAATGTTT ATTTGATCAT
TTTGAAGAGC TGCCAAAAAC TTGGCTAGAA ACCAAGATAA AAACCGCCGC CGATCTGGAA
ACTCGTTCCT TCTCTAGCTG GGAAAACCGG CCGTACCTTT TTAAATTCAA CAATTTTTCT
CCGGTTTCAA ACAGCAGTGA TTTCATGTAT CAAGACATCG TAATCACCCC GTTAATTGGG
CTCTCAGGAG AGGTCAGTCA CATTGCTATT CAAGTGAATG ATGTCTCTGA AACGGCAAGA
AATCGCATTC ATTTGAAAGA AACAAATCAA CATTTGTCTG AAATCAGTCG CAAAGATGGT
TTAACAGGTT TATTTAATCG TGCTTATTGG GAGCAATCGC TGAAAGAAGA GTTTGCTCAC
CTAAAAGTTA TCGACGGACC ATGCTCATTA GTAATATTTG ATATCGACCA CTTTAAAAAA
GTGAATGATA CCTATGGTCA CCCGACGGGA GATGAAGTCA TTCGTCGTAC TTCTTCGTTA
TTAAGAAAGA CAGCAAGAAG CAGTGATGTG TGCGGTCGTT TTGGCGGAGA AGAGTTTACG
GTATTGCTTC CTCATACGAA TCAAGAACAA GCTTGCTATT TCGCGGAGCG TTTACGTAAA
AGAATTGAGC AAGAGATCGT GAAAGTGGAA GATTTTTTGA TTAATTACAC GATAAGTATT
GGTGTTTGCG AGTATAAACC TTATTTTGAA ACTCACACTC AATGGTTAAA GAGTGCCGAT
GCTGCGTTGT ATCGTGCAAA AGAAAACGGT CGTAACCAAA CTTGTTTGCA TGAAAATGAC
TGA
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| Protein sequence | MQSYSGVLSQ EILGQCLFDH FEELPKTWLE TKIKTAADLE TRSFSSWENR PYLFKFNNFS
PVSNSSDFMY QDIVITPLIG LSGEVSHIAI QVNDVSETAR NRIHLKETNQ HLSEISRKDG
LTGLFNRAYW EQSLKEEFAH LKVIDGPCSL VIFDIDHFKK VNDTYGHPTG DEVIRRTSSL
LRKTARSSDV CGRFGGEEFT VLLPHTNQEQ ACYFAERLRK RIEQEIVKVE DFLINYTISI
GVCEYKPYFE THTQWLKSAD AALYRAKENG RNQTCLHEND
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