Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_003238 |
Symbol | |
ID | 8556971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 1800135 |
End bp | 1803206 |
Gene Length | 3072 bp |
Protein Length | 1023 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646406333 |
Product | type I restriction-modification system restriction subunit R |
Protein accession | YP_003285863 |
Protein GI | 262394009 |
COG category | [V] Defense mechanisms |
COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGTTAGTA AAACAAATGA ACAGGCGCTA GAAGCAGCAA TAGAGAAAGG CTTAGCTGGT ATTTGTAGAG AAGAGTTAGC GTTGGGTGAC GCGCCTCTAA ACTACAACAA TGAACTCTAT CTTGTCGGTT TTCCAAGTGA CTTCGACAAA CAATATGCCC TAGATACACG TTTCTTCTGG CAGTTTCTTG AAGAGACACA AGCGAGTGAG TTAGACAAGC TAAAGCGCAC CAGCCCTCAT GATTGGCAAA GAAAAATCCT TGAACGTTTT GATCGTATGA TTAAGCGCAA GGGTGTTTTG AGCCTACTTA AAAAGGGCTT GGAGGTTGAT GACGCTTTCC TCACTCTAAT GTACCCAGCT CCGCTTGTTA GTAGCTCAGA AAATGTAAAA AAGAACTTCT CTGCCAATAT TTTTAGCGTG ACACGACAGG TTTGTTATTC CAATGCGAAT CCGTTGGAAG AGATTGATAT GGTTCTTTTT ATAAATGGTA TCCCGTTGAT TACCCTTGAG CTTAAAAATA AATGGACGGG TCAGAACGCA GCTTATCATG GTCAAAATCA GTATCGGAAT GATAGAGATG CAAATCAACC ATTGCTGAAC TTTGCTCGTT GTTTGGTTCA TATGACGGTA GATACCGATG AAGTCTATAT GACGACCAAA CTGGCAGGTA AAAAGACATT CTTCTTACCG TTCAATAAAG GCTTCAACCT AGGTAAAGGA AACCCCACTA ACCCGCACGG CCACAAGACG GCTTACTTGT GGCAAGAGGT GTTCCGCAAA GAAAGCATCG CTAATATTAT TCAGCACTTT GTTCGTCTTG ATGGCAGCAG TAAAAAGCAG TTGGATAAAC GAACTTTGTT CTTCCCTCGA TACCACCAAA TGGATGTCGT ACGTCGCTTG GTTGATCATT GCTCAGTTAA TGGTGTTGGG CAAACGTATT TGATACAGCA CTCAGCGGGT TCAGGTAAGT CTAACTCAAT TACATGGGCT GCGTATCAGC TCATCGAAAC TTATCCTATT AGCGATGATC TACCAGGAAG TAGAGGGAAA GAAGTGCCTC TATTCGATTC GGTTATCGTC GTTACCGACC GCCGATTGCT TGATAAGCAG CTACGCGACA ATATTAAAGA GTTCTCCGAA GTGAAGAACA TTGTTGCACC AGCGTTCAAA TCGTCTGAGC TAAAGTCTGC ATTAGAGAGT GGCAAGAAAA TTATCATTAC CACCATTCAG AAGTTTCCGT TCATTATTGA TGGTATTGCA GATTTAAGTG ACAAGCGCTT TGCCGTCATT ATTGATGAGG CTCACAGCTC TCAGTCAGGC TCCGCTCATG ACAATATGAA CCGTGCAATG GGTAAGAAGG AAGTGGAAGA GCTGGAAGAT GCTCAGGACA AAATCCTACA GGCAATGCGC TCTCGTAAGA TGCGTGGAAA TGCCTCTTAT TTTGCGTTCA CCGCAACGCC TAAAAACACC ACTCTAGAAA AGTTTGGTCA GCGACAAGCG GACGGAACTT ACGCTCCTTT CCATTTGTAT TCGATGAAAC AAGCGATCGA AGAAGGCTTC ATTCTCGATG TTATTGCCAA CTACACGACT TATAAGAGTT ATTACGAGAT TGAAAAATCA ATCCAAGATA ACCCTGAGTT CGACAGTAAA AAAGCGCAGA AGCGTTTGCG AGCGTATGTA GAGGCAAGCC AAGAAACCAT AGATACCAAA GCCGAGATCA TGCTTGAACA TTTTATCAAA CATGTGATTA ACGGTAAGAA GCTTAAAGGT AAAGGCAAAG GCATGGTGGT TACTCAAAAT ATTGAGTCAG CTATCCGCTA CTATCGAGCG TTAACAAGGC AACTCGATAA GATGGGTAAC CCATTTAAAG TCGCGATTGC CTTCTCTGGC ACCAAAGAAG TTGATGGTAT TGAATACACT GAAGCAGATC TTAATGGGTT CCCAGAAGGT GATACCAAAG ATTACTTTGA TGTGAACTAC AAGCGTAAGG AGTCGGACTC CCCAATTCCT AAGCATGTAG ATCAGGATGC TTTTCGTTTG TTGGTCGTGG CGAATAAGTA TTTGACAGGT TTTGACCAAC CGAAGCTTTG TGCCATGTAT GTGGATAAAA AACTGGCGAG TGTACTGTGT GTGCAAGCGC TGTCTCGCTT GAACCGTTCA GCACCAAAGT ACGGTAAGAA AACGGAAGAT CTGTTTGTGT TGGATTTCTT CAACTCAGTG GATGATATCA AAACCGCATT CGACCCTTTC TATACATCGA CAACGCTTTC TGAAGCCACT GATGTCAATG TTCTTCATGA GCTAAAAGAT GATATGGACG ACACGGGTGT TTATGAGTGG TTTGAAGTTG AGGAGTTCAA CAAGCGTTTC TTTGAAGGAA GAGATGCTCA GGACCTAAGC CCAATCATTG ACATCGCAGC TGCGCGTTTT AACCACGAGT TAGAATTAGA AAACGAATTT AAAGTCGATT TCAAAGTGAA GGCCAAGCAG TTTGTGAAAA TCTACGGCCA GATGGCATCT ATCATGCCTT ATGAGGTCGT TCAGTGGGAA AAACTGTTCT GGTTCTTGAA GTTTTTGATT CCAAAACTTT CCGTCGAAGA CCCAGATAAA GAGGCATTAG ACTCGTTACT AGACTCAGTC GATTTGAGTT CTTATGGATT ACAAAGGGTT AAGCTTAATT ATTCCATCGA GCTAGATGAC TCTGAAACTG AGTTAGATCC TCAAAACCCG AACCCGCGCG GAGCTCATGG TCCTGAAAGT GAAAAAGACC CGTTAGATGA GATCATCCAA ATCTTTAACG AACGTTGGTT TCAAGGTTGG AGCGCAACAC CAGAAGAGCA ACGCGTTAAG TTTGTGAACA TTGCTGAGAG CATCCGTAAT CACCCAGACT TCGAAGCTAA ATACCAAAAC AATGCCGACC CTCATACGCG AGAGCTGGCG TTTGAGAAGA TGTTGAAAGA AATCATGCTT CAACGCCGTA AAGACGAATT AGAACTCTAC AAGCTGTTTG CACAAGACCC TGCTTTTAAA GCATCGTGGA CGCAAAGCAT GCAGCGTATG GTTGGGATGT AG
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Protein sequence | MVSKTNEQAL EAAIEKGLAG ICREELALGD APLNYNNELY LVGFPSDFDK QYALDTRFFW QFLEETQASE LDKLKRTSPH DWQRKILERF DRMIKRKGVL SLLKKGLEVD DAFLTLMYPA PLVSSSENVK KNFSANIFSV TRQVCYSNAN PLEEIDMVLF INGIPLITLE LKNKWTGQNA AYHGQNQYRN DRDANQPLLN FARCLVHMTV DTDEVYMTTK LAGKKTFFLP FNKGFNLGKG NPTNPHGHKT AYLWQEVFRK ESIANIIQHF VRLDGSSKKQ LDKRTLFFPR YHQMDVVRRL VDHCSVNGVG QTYLIQHSAG SGKSNSITWA AYQLIETYPI SDDLPGSRGK EVPLFDSVIV VTDRRLLDKQ LRDNIKEFSE VKNIVAPAFK SSELKSALES GKKIIITTIQ KFPFIIDGIA DLSDKRFAVI IDEAHSSQSG SAHDNMNRAM GKKEVEELED AQDKILQAMR SRKMRGNASY FAFTATPKNT TLEKFGQRQA DGTYAPFHLY SMKQAIEEGF ILDVIANYTT YKSYYEIEKS IQDNPEFDSK KAQKRLRAYV EASQETIDTK AEIMLEHFIK HVINGKKLKG KGKGMVVTQN IESAIRYYRA LTRQLDKMGN PFKVAIAFSG TKEVDGIEYT EADLNGFPEG DTKDYFDVNY KRKESDSPIP KHVDQDAFRL LVVANKYLTG FDQPKLCAMY VDKKLASVLC VQALSRLNRS APKYGKKTED LFVLDFFNSV DDIKTAFDPF YTSTTLSEAT DVNVLHELKD DMDDTGVYEW FEVEEFNKRF FEGRDAQDLS PIIDIAAARF NHELELENEF KVDFKVKAKQ FVKIYGQMAS IMPYEVVQWE KLFWFLKFLI PKLSVEDPDK EALDSLLDSV DLSSYGLQRV KLNYSIELDD SETELDPQNP NPRGAHGPES EKDPLDEIIQ IFNERWFQGW SATPEEQRVK FVNIAESIRN HPDFEAKYQN NADPHTRELA FEKMLKEIML QRRKDELELY KLFAQDPAFK ASWTQSMQRM VGM
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