| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_003132 |
|---|
| Symbol | |
|---|
| ID | 8556865 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1703680 |
|---|
| End bp | 1704771 |
|---|
| Gene Length | 1092 bp |
|---|
| Protein Length | 363 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 646406227 |
|---|
| Product | TRAP transporter solute receptor |
|---|
| Protein accession | YP_003285757 |
|---|
| Protein GI | 262393903 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG4663] TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000514187 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCTAA TCCAAAAATC TTTAAAACGA GTGCTCAAAA CAACCGCTGT CGTTGCCGCG
ATGACATTCG TTGTGACTTC TGCAAATGCT GCTGAAAAAG TCTATCGTTT AAAGCTTGCT
GAAACTTGGG GACCTAACTT CCCTATTTTT GGTGATGCGA CAAAAAACAT GGCAAAAATG
GCAGAGGAGA TGTCCAACGG GCGTCTACAA ATCCGTATTG ATTCCGCAAA CAAGCACAAA
GCGCCTTTTG GGGTGTTTGA TATGGTTAAG TCTGGTCAAT ACGACATGGG CCACTCGGCG
TCTTACTACT GGAAGGGCAA GGTTCCAAAC ACACTTTACT TCACTTCTAT GCCTTTCGGT
ATGTTACCAA CTGAGCAGTA TGCGTGGTTT TACTACGGCG GTGGTATGGA GCTGATGGAG
AAGGTGTACT CTCCACATAA TTTGATGTCT TTCCCTGGCG GTAATACCGA TACTCAGATG
GGCGGGTGGT TCCAGAAAGA GATCAAGTCC GTCGAGGATT TGCAGGGTTT GAAAATGCGT
ATCCCAGGTT TTGCTGGTGA GATCTTGGCA GAGCTAGGTG CAAAACCAAC GAATATCGCC
CCTGGTGAAC TATATACCTC TCTAGAGCGT CGCACAATTG ATGCCTTGGA GTGGGTTGGT
CCATCATTGG ATTTGCGCAT GGGATTCCAC AAAATCGCGC CATACTACTA CACAGGTTGG
CATGAGCCAG CAACTGAGCT TCAGTTCCTT GTTAATAAGC GTACTTGGAA CCGTCTACCT
GATGATCTAA AAGCGATTTT ACAAGTAGCA ATGAAAACCG CCGCTTACGA TATGTACACG
CAATCGAAAC ACGAAAGTGG CAAAAACTGG GCATCTATCA AATCTGAATA CCCAAATGTT
GAAGTCAAAG ACTTCCCGCC TGAAGTAGTG GCTGCGTTGC GAGAAGCAAA CGATCGTTTG
TTGAAAGAGC ACGCAGAAAA AGATGCTTTG GCGAAAGAGA TTCAAGAGTC GCAAGCGAAC
TACATGAATC AAGTTCGACC TTGGTCAGAC ATTTCACACC GAGCTTACTT AAACAGTCAA
GCTCAACAAT AA
|
|---|
| Protein sequence | MSLIQKSLKR VLKTTAVVAA MTFVVTSANA AEKVYRLKLA ETWGPNFPIF GDATKNMAKM
AEEMSNGRLQ IRIDSANKHK APFGVFDMVK SGQYDMGHSA SYYWKGKVPN TLYFTSMPFG
MLPTEQYAWF YYGGGMELME KVYSPHNLMS FPGGNTDTQM GGWFQKEIKS VEDLQGLKMR
IPGFAGEILA ELGAKPTNIA PGELYTSLER RTIDALEWVG PSLDLRMGFH KIAPYYYTGW
HEPATELQFL VNKRTWNRLP DDLKAILQVA MKTAAYDMYT QSKHESGKNW ASIKSEYPNV
EVKDFPPEVV AALREANDRL LKEHAEKDAL AKEIQESQAN YMNQVRPWSD ISHRAYLNSQ
AQQ
|
|---|
| |