| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002863 |
|---|
| Symbol | |
|---|
| ID | 8556591 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1392385 |
|---|
| End bp | 1393470 |
|---|
| Gene Length | 1086 bp |
|---|
| Protein Length | 361 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 646405954 |
|---|
| Product | chorismate synthase |
|---|
| Protein accession | YP_003285490 |
|---|
| Protein GI | 262393636 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0082] Chorismate synthase |
|---|
| TIGRFAM ID | [TIGR00033] chorismate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGAA ACAGTATCGG ACAACATTTC CGAGTGACGA CATTCGGGGA AAGTCACGGT
ATCGCACTGG GATGTATCGT AGACGGATGT CCTCCGGGGT TAGAAATTAC AGAAGCAGAT
CTGCAAATCG ATCTCGACCG CCGTCGTCCA GGCACATCAC GTTACACCAC ACAACGTCGT
GAACCGGATG AAGTTAAAAT TCTTTCTGGT GTTTTTGAAG GCCAAACCAC AGGCACATCG
ATCGGTTTGC TAATTGAAAA CACCGATCAG CGCTCAAAAG ATTACTCGGA CATCAAAGAT
AAATTCCGTC CGGGTCATGC TGATTATACT TACCACCAAA AGTATGGCAT CCGTGACTAT
CGAGGTGGTG GCCGTTCGTC TGCTCGTGAA ACCGCAATGC GTGTGGCGGC GGGTGCAATC
GCGAAGAAAT ACTTGAAAGA TGAGTTTGGT GTTGAGATTC GCGCGTACTT GTCACAAATG
GGTGATGTTT CTATCGACAA GGTAGATTGG AACGAAATCG AAAACAATGC GTTTTTTTGC
CCAGATGTGG ACAAAGTAGA AGCGTTTGAC AAACTTATCC GTGACCTGAA AAAAGAAGGC
GACTCAATTG GCGCGAAAAT TCAGGTTGTG GCAACTAACG TGCCTGTTGG TCTTGGTGAA
CCTGTATTTG ACCGTCTGGA TGCAGACATC GCACACGCGC TAATGAGCAT TAATGCGGTG
AAAGGCGTTG AGATCGGTGA TGGCTTTGAT GTGGTAAACC AAAAAGGCAG TCAACACCGT
GATACGCTTG CTCCTGAAGG TTTTGGCAGT AATCACGCGG GCGGTATTCT TGGCGGTATC
TCAACTGGTC AAGACATTGT GGCTAACATT GCGCTTAAGC CAACATCAAG CATTACGGTT
CCGGGTGAGA CCATCACAAA AGAAGGTGAG CCAACTCAAT TGATCACCAA AGGCCGTCAT
GATCCTTGTG TGGGTATTCG TGCCGTACCA ATTGCTGAAG CGATGCTAGC GATTGTGGTG
ATGGATCATT TGCTGCGTCA TCGTGGTCAA AACCATGGCG TAACAACTGA AACACCGAAG
ATTTAA
|
|---|
| Protein sequence | MAGNSIGQHF RVTTFGESHG IALGCIVDGC PPGLEITEAD LQIDLDRRRP GTSRYTTQRR
EPDEVKILSG VFEGQTTGTS IGLLIENTDQ RSKDYSDIKD KFRPGHADYT YHQKYGIRDY
RGGGRSSARE TAMRVAAGAI AKKYLKDEFG VEIRAYLSQM GDVSIDKVDW NEIENNAFFC
PDVDKVEAFD KLIRDLKKEG DSIGAKIQVV ATNVPVGLGE PVFDRLDADI AHALMSINAV
KGVEIGDGFD VVNQKGSQHR DTLAPEGFGS NHAGGILGGI STGQDIVANI ALKPTSSITV
PGETITKEGE PTQLITKGRH DPCVGIRAVP IAEAMLAIVV MDHLLRHRGQ NHGVTTETPK
I
|
|---|
| |