Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002846 |
Symbol | |
ID | 8556574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 1372555 |
End bp | 1374531 |
Gene Length | 1977 bp |
Protein Length | 658 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 646405937 |
Product | cytochrome c heme lyase subunit CcmF |
Protein accession | YP_003285473 |
Protein GI | 262393619 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG1138] Cytochrome c biogenesis factor |
TIGRFAM ID | [TIGR00353] c-type cytochrome biogenesis protein CcmF |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTGCTG AAATCGGTCA CTTTGCTCTC ATTCTTTCGC TTGCAATGGC TGTGCTGCTG AGCGTATTGC CATTGTGGGG AGCATCGAAT AATAACACCA TGCTCATGAA CACAGCGCGA CCGCTATCTT GGTCTATGTT CCTGATGCTG TTGTTCTCTT TCGCCATTTT ATGTTGGGGA TTTTATACCA ACGACTTCAC GTTACAGTAT GTAGCGAGCA ACTCGAATAG TCAGCTTCCT TGGTACTACC GTTTAACCGC AGTATGGGGT GCACACGAAG GTTCACTGTT GCTATGGGTT TTAATCCAAG CTGCTTGGAC TGTCGCTGTA GCGACATTCA GTCGTGGTAT GCCGCAAGAG TCGGTTGCAC GTGTACTTGC CGTAATGGGC ATGATCTCAG TGGGTTTCCT ACTGTTTATC ATCTTAACGT CAAACCCATT CTTACGTACG TTGCCTTTCT TCCCGGTTGA CGGGCGTGAC TTGAACCCTC TGCTTCAAGA CCCTGGTTTG ATTGTTCACC CGCCAATGCT TTACATGGGC TACGTTGGTT TCTCGGTTGC CTTCTCTTTT GCGATCGCAT CCCTAATGAC TGGACGCCTT GATACGGCTT GGGCCCGTTG GTCTCGTCCT TGGACAACCG CTGCATGGGT ATTTTTAACA CTCGGTATCG CACTAGGCTC TTGGTGGGCT TACTACGAAC TTGGCTGGGG TGGCTGGTGG TTCTGGGACC CAGTAGAAAA CGCATCATTC ATGCCTTGGT TAGCGGGTAC CGCATTGATG CACTCTCTTG CCGTGACAGA AAAACGCGGC ACATTTAAAG CGTGGACGGT ACTATTGGCA ATCTCTGCAT TTTCGTTGAG TTTGTTGGGC ACATTCTTAG TCCGTTCCGG TATTTTAGTA TCGGTGCATG CGTTCGCGTC TGACCCGTCG CGCGGTATGT TTATTCTAGG TTTCTTAGTT TTCGTTATCG GTGGTTCTTT ACTGCTGTTT GCCGTGAAAG GGGCGGCAGT GCGTGTACGA GGTAACTTCG ACTTAGTCTC TCGTGAAAAC GCGCTCCTAG CCAATAACGT ATTACTTATC GCAGCACTTG TTGTGGTGTT AGTGGGGACA TTATTGCCGC TCGTACATAA GCAGCTTGGT TTGGGGTCGG TTTCTATCGG TGCTCCATTC TTCGACATGC TGTTTGCGTG GTTGATGATG CCATTTGCTT TCCTACTTGG TATTGGTCCA CTTATCCGTT GGAAGCGAGA CAATTTATCT AAACTTGTGA AACCAATGCT CGTTTCAGGT GTGCTTGCTT TTGCTTTGGC CGCGGTATGC GTATACCTGT TTGCCGACTT CTTCTCAACT ATGGCTTACA TTGGCTGGGT AATGGCGATT TGGATTATTG CAATGCATGG CTTTGAACTA TATGAGCGTG CAACGCACCG TCATAGCTTT AGTGAAGGCG TTCGCAAGCT GCAGCGTAGC CATTGGGCGA TGATGTTGGG TCATGTTGGT CTGGCGGTAT CTGTTATCGG TATTGCGATG GTACAGAACT ACAGCATCGA GCGTGATGTA CGTTTAGCAC CTGGCGAACA CTTCCAAATT CAAGGTTATG ATTTCTACTT CTCAGGCCTG CGTGATAAAG ATGGTCCAAA CTACGATGGC TACATCGCGG ATTTTGAGAT CACACATGAT GGCAAATACG TGAATACGCT TCACGCTGAG AAGCGCTTCT ACCGTACGGC TAAGTCTATG ATGACCGAAG CTGCCATTGA CCGTGGAATT AGTCGTGACT TATACATTGC AATGGGTGAA CGTTTAGACG ACAACCGATC TTGGGCTGTT CGTATTTACT ATAAACCGTT CGTTCGTTGG ATTTGGGCTG GCTCTTTGAT TATGGCGTTA GGCGGTGCAC TAGCGATTTC AGATAAGCGT TATCGCTTCC GTAAATCTTC AAAGAAAAAC GCGAAGTCAA AAGAGCAGGA GGCATAA
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Protein sequence | MIAEIGHFAL ILSLAMAVLL SVLPLWGASN NNTMLMNTAR PLSWSMFLML LFSFAILCWG FYTNDFTLQY VASNSNSQLP WYYRLTAVWG AHEGSLLLWV LIQAAWTVAV ATFSRGMPQE SVARVLAVMG MISVGFLLFI ILTSNPFLRT LPFFPVDGRD LNPLLQDPGL IVHPPMLYMG YVGFSVAFSF AIASLMTGRL DTAWARWSRP WTTAAWVFLT LGIALGSWWA YYELGWGGWW FWDPVENASF MPWLAGTALM HSLAVTEKRG TFKAWTVLLA ISAFSLSLLG TFLVRSGILV SVHAFASDPS RGMFILGFLV FVIGGSLLLF AVKGAAVRVR GNFDLVSREN ALLANNVLLI AALVVVLVGT LLPLVHKQLG LGSVSIGAPF FDMLFAWLMM PFAFLLGIGP LIRWKRDNLS KLVKPMLVSG VLAFALAAVC VYLFADFFST MAYIGWVMAI WIIAMHGFEL YERATHRHSF SEGVRKLQRS HWAMMLGHVG LAVSVIGIAM VQNYSIERDV RLAPGEHFQI QGYDFYFSGL RDKDGPNYDG YIADFEITHD GKYVNTLHAE KRFYRTAKSM MTEAAIDRGI SRDLYIAMGE RLDDNRSWAV RIYYKPFVRW IWAGSLIMAL GGALAISDKR YRFRKSSKKN AKSKEQEA
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