Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002685 |
Symbol | |
ID | 8556413 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 1210905 |
End bp | 1214579 |
Gene Length | 3675 bp |
Protein Length | 1224 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 646405776 |
Product | exodeoxyribonuclease V beta chain |
Protein accession | YP_003285312 |
Protein GI | 262393458 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
TIGRFAM ID | [TIGR00609] exodeoxyribonuclease V, beta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGGTG CAGAGTGTCC TCTACATACG TTAGACCGCA CAGAGCAACC TCAACCAACG CCACTAGAAC CGATGACGTT TCCTCTGCAT GGTGCGAGGT TAATCGAGGC ATCAGCAGGT ACAGGTAAAA CCTTCACTAT TGCAGGTTTA TATCTGCGTC TTTTGCTTGG TCATGGCAGC GCGGAAACTC GACATCGCGT ACCGCTTACG GTCGACCAAA TTCTGGTTGT AACCTTTACC GAAGCGGCAA CTGCGGAATT GCGCGATCGT ATCAGGGCAA GAATCCATGA TGCGCGAATC GCGTTTGCGC GTGGACAGAG TTCCGACCCG GTGATCCAAC CTTTGCTTAA TGAGTTTGAC GATCACAAGC AAGCCGCAGA AATTTTATTG CAGGCAGAGC GTCAGATGGA CGAGGCGGCG GTCTACACCA TTCACGGTTT TTGCCAACGC ATGCTAACGC AAAATGCGTT TGAATCTGGC AGCCGATTTA ATAACGAGTT TGTGACCGAT GAAAGTCACC TAAAATCGCA AGTTGTAGCC GATTACTGGC GCCGCAACTT TTACCCGTTG CCATTTACCT TGGCTGGAGA AATTCGCCAG CTATGGGGCT CTCCATCTGC GTTGTTGTCT GACATCAGCA ATTACTTAAC CGGTGCGCCG TTAAGCCTTT CTGTTCCTGC AATGAAAGGC AGTTTGGCTG ATCTTCATAC TGAAAATTTG AAAAAAATTG ATGAATTAAA AGCACAGTGG CGAGAAAGCC AAGATGACTT CTTAACGCTG ATTTCAGATT CAGATATTAA CAAGCGCAGC TACACCAAAA AGTCTCTGCC GACGTGGTTG GAGGCGGTAA ACGCTTGGGC GGCAACGGAA ACTACAGGTT ACGATTATCC AGACAAGCTG GAGAAATTCG CGCAAAACGT CTTGTTGGAA AAAACACCGA AAGGCAGTGC GCCGCAGCAC GCGGTATTTG AAGCCATTGA AACATTTCTT GCCAATCCAA TCAGCTTAAA AGCGCCACTG CTTGCGCATG CGATTGAGCA TTGTCGTGTG ATGCTGGCCA ATGCGAAAAA TCAAAAACAG TGGCTCTCTT TCGATGATTT GCTGACGCAA CTTTCTGCTT CTATCGATAC GGACGAAAGC GAGCTTTTAG CGGCGCGTAT TCGTACTTTG TACCCTGTCG CAATGATTGA CGAGTTCCAA GATACTGACC CGCTTCAATA CAGTATTTTC AGCCGTATTT ATCTGAACAA CCCGGAATGT GGTTTGTTTA TGATCGGTGA CCCCAAGCAG GCGATTTATG GCTTTCGTGG AGCAGACATT TTCACTTACA TCAAAGCGCG TAACCAAGTA AGTGCCCACT ACACGTTAGG AACCAACTGG CGTTCAAGTG CCGATATGGT GCAGGCGGTA AACCAAGTAT TTGCTTTGCC AGACAGTCCA TTTATCTATG ATTCGGATAT TCCGTTCTTA CCCGTTAAGT ACAGTCCCAA TGCCGAAAAA CGCATTTGGA CTATGGGTGG CCAAAAGCAA CCCGCGCTGA CTTATTGGTT GCAAGAAGCG GACGATAAAC CGCTACCAAA AGGCGAGTAT TTGACTCGAA TGGCAGAGGC GACCGCAAGC CAAATCCAAA CTATTTTGAC GCAGGCTCAA CAGGGGCAAG CGTGTCTGGT GAATGGCGAA AAACAGAAAG CGGTTCAAGC GGGCGATATC GCGGTGTTGG TTCGAACAGG TAGTGAAGGT CGAATGATCA AACAAGCGCT AGCAGACCAA GGCATTGCCA GTGTGTACCT GTCTAACCGA GACAGTGTGT TTACCAGTTC GGTGGCGCAG GATCTACAGC GTTTGCTGCA AGCGGTGCTG ACTCCAGAAA ATGACCGTGC GCTGCGTGCA AGTCTTGCCT CTGAGCTGTT TGCCCTCGAT GCAGCAAGTT TGGATGCGCT TAATAACGAT GAAGTGGTGT GGGAAAATGC CGTAAACGAA TTCAAAGAAT ATCGCAAACT TTGGGTTCAG CGTGGTGTGC TGCCGATGTT ACGCGCGGTG ATCAGCAAAC GCCATATTGC CGAGCGATTA CTAGAAGAAG GTGCGAGTTC ACAGGGTGAG AATGGTGAGC GAGTACTTAC CGATTTAATG CACATCGGTG AACTGCTTCA ACAAGCCAGT AATGAACTGG ATAGCGACCA CGGTCTGCTG CGTTGGCTCG CTCAGTCTAT CAGTGATGCG GAAAACGGTT TGGGTGGCAG TGATGACCAA ATCCAACGTT TAGAATCGGA ACGTAACTTA GTGCAGATCG TAACTATTCA CAAATCAAAA GGCTTGGAGT ATGACCTCGT ATTTCTGCCG TTTGTGTTCA GCTATCGAGA AGCCAGTGAA GCCAAATATT ACGATGCAGC CAATGACCGC ACGGTACTGG ATATCACTGG CAACGATGCG TCCATGAAGC AAGCGGATAA AGAGCGTTTG GCGGAAGACT TACGCTTGAT ATACGTGGCA CTAACGCGTG CTGTGTATGC GTGTTTTATT GGAGCCTCGC CTTTGCGCAA TGGTCGTTCG ACCAAAGAGC CAACTGGCGT ACACCGCAGT GCGATTGGCT ATTTGATTCA GAATGGTCAA GAAGGTGGCA TTAACGATTT GCACCAAGGT TTAACACAGC AACAAGACGA GCTTGATTGT GTCGTTGTGG CCGATCCGCC GCAGCAACTC GAAGAGAAGT ACGTAGCGCC ACAAGAAGAA ATACACGATC TTAGCGCGAA AGAACTGCAA AACCCTATCG ACAGAAACTG GCGCATCACC AGTTATTCTG GCTTGGTCAA GCAAGGCTCT CATCACGCCG AGCATGATGC CACGATTGAG ATTACGGGTT TTGATATCGA CTCATCTGAA GAACAAGACG AAGCGGATTT ACTGGAGCCA GAGCGTTCGA TTTTTACCTT TCCACGTGGT GCGCGTCCGG GTACGTTCCT GCACAGCCTG TTTGAGGAAA TTGAGTTTAC TCAGCCAGCC ACGACGGAAG AGAATACACA AATCATCCTT GGTTTGATGG AAAGCGAACA GCTCGATGAA GAGTGGTTGC CCATTTTACA ACAATTGATT GATACCGTAC TCGCAACGCC GTTGGATGGT AAGTCTTTGC TGCTGAATCA AAAAGCACCG TCGCAACGTT TGGTGGAGAT GGAATTTTTG TTGCCGATTG AAGTGTTGTC TGCACCGGCG TTAAACCGAG TCATTCAACG TCACGATCCG TTGTCGGCGA AAGCGGGGGA TTTAGGTTTC CAAACCGTGC AAGGCATGCT CAAAGGTTTT ATCGACTTGG TGTTTGAACA TCAAGGTAAA TACTACGTGC TTGACTGGAA ATCGAATCAT CTTGGCGACG ATGTAACGAG CTACCATGGT GAGGCTCTGA AATCGGCCAT GGCGGATCAC CGCTACGATT TGCAGTATCA GATTTATGCG TTAGCACTGC ATCGTTTCCT ACGCAGCCGA TTGGCGAATT ATCAATATGA GCAGCACTTC GGTGGCGTGT ATTACTTGTT CTTGCGCGGC ATGGATGGGC AGAGTGACCA CGGCATTTTT GCCGCGAAAC CAACCTTAGA GTTCTTACAA GAGATGGATC GTTTGATTGA TGGTCAAGTA CTTGAAACGC GCTCAACTCA AGCCGGGCAG ATGGAGCTAC TTTAA
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Protein sequence | MSGAECPLHT LDRTEQPQPT PLEPMTFPLH GARLIEASAG TGKTFTIAGL YLRLLLGHGS AETRHRVPLT VDQILVVTFT EAATAELRDR IRARIHDARI AFARGQSSDP VIQPLLNEFD DHKQAAEILL QAERQMDEAA VYTIHGFCQR MLTQNAFESG SRFNNEFVTD ESHLKSQVVA DYWRRNFYPL PFTLAGEIRQ LWGSPSALLS DISNYLTGAP LSLSVPAMKG SLADLHTENL KKIDELKAQW RESQDDFLTL ISDSDINKRS YTKKSLPTWL EAVNAWAATE TTGYDYPDKL EKFAQNVLLE KTPKGSAPQH AVFEAIETFL ANPISLKAPL LAHAIEHCRV MLANAKNQKQ WLSFDDLLTQ LSASIDTDES ELLAARIRTL YPVAMIDEFQ DTDPLQYSIF SRIYLNNPEC GLFMIGDPKQ AIYGFRGADI FTYIKARNQV SAHYTLGTNW RSSADMVQAV NQVFALPDSP FIYDSDIPFL PVKYSPNAEK RIWTMGGQKQ PALTYWLQEA DDKPLPKGEY LTRMAEATAS QIQTILTQAQ QGQACLVNGE KQKAVQAGDI AVLVRTGSEG RMIKQALADQ GIASVYLSNR DSVFTSSVAQ DLQRLLQAVL TPENDRALRA SLASELFALD AASLDALNND EVVWENAVNE FKEYRKLWVQ RGVLPMLRAV ISKRHIAERL LEEGASSQGE NGERVLTDLM HIGELLQQAS NELDSDHGLL RWLAQSISDA ENGLGGSDDQ IQRLESERNL VQIVTIHKSK GLEYDLVFLP FVFSYREASE AKYYDAANDR TVLDITGNDA SMKQADKERL AEDLRLIYVA LTRAVYACFI GASPLRNGRS TKEPTGVHRS AIGYLIQNGQ EGGINDLHQG LTQQQDELDC VVVADPPQQL EEKYVAPQEE IHDLSAKELQ NPIDRNWRIT SYSGLVKQGS HHAEHDATIE ITGFDIDSSE EQDEADLLEP ERSIFTFPRG ARPGTFLHSL FEEIEFTQPA TTEENTQIIL GLMESEQLDE EWLPILQQLI DTVLATPLDG KSLLLNQKAP SQRLVEMEFL LPIEVLSAPA LNRVIQRHDP LSAKAGDLGF QTVQGMLKGF IDLVFEHQGK YYVLDWKSNH LGDDVTSYHG EALKSAMADH RYDLQYQIYA LALHRFLRSR LANYQYEQHF GGVYYLFLRG MDGQSDHGIF AAKPTLEFLQ EMDRLIDGQV LETRSTQAGQ MELL
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