Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002611 |
Symbol | |
ID | 8556339 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 1120308 |
End bp | 1121261 |
Gene Length | 954 bp |
Protein Length | 317 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646405702 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_003285238 |
Protein GI | 262393384 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCTCGTC GTCGTAAAGG TCGTCCAATT AATGGCGTTA TACTGTTGGA CAAACCAACA GGCATCTCTT CCAATGATGC ACTGCAAAAA GTAAAGCGAA TCTACTTTGC TGAGAAAGCA GGCCACACTG GTGCCTTGGA CCCATTAGCG ACAGGCATGC TGCCAATTTG CTTGGGTGAA GCGACGAAGT TTTCTCAGTT TCTTCTAGAT TCTGATAAAC GCTACCGTGT GATCGCAAAG CTTGGTGAAC GTACCAACAC GTCTGACTCG GATGGTGAAG TCGTAGAGAC ACGTCCAATC GATGTTACGT TAGACAAGCT AGAAGCGTGC ATTGAGAAGT TCCGTGGCGA ATCTGATCAA GTACCTTCCA TGTTTTCAGC GTTGAAATAT CAAGGGAAAC CCTTGTATGA ATACGCTCGA AAAGGCATCG AAGTTCCGCG TGAATCTCGT AAGATCACGG TATATGAGAT TGTTCTTCAC CGTTTTGAAG GCGATGAAGT CGAGATGGAA GTTCATTGCT CAAAAGGCAC CTACATTCGT ACCATCGTGG ATGACCTAGG CGAAATGTTA GGTTGTGGTG CGCACGTAAC TATGCTTCGA CGCACTGGTG TTGCGAAATA CCCTTACGAG AAGATGGTGA CACTTGAGCA ACTGAATGAG TTACTAGAGC AAGCACACCG TGAAGAACGC GCTCCTCGAG AACTACTGGA CCCATTGCTG TTACCAATGG ATACAGCGGT AGAAGACTTA CCAGAAGTCA ACTTAGTGCC TGAACTGGCG GATATGGTTC AGCATGGGCA ACCTGTTCAA GTATTTGGTG CGCCTACCGA AGGCTCACTT CGCCTTACCA TGGGTGAAGA GCGTTTGTTT ATTGGCGTTG GCGAAATGAA CGAAGATGGC AAAATCGCTC CTAAGCGATT GGTTGTGTTC CGAGATGACG TCGCATCCAA GTAA
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Protein sequence | MARRRKGRPI NGVILLDKPT GISSNDALQK VKRIYFAEKA GHTGALDPLA TGMLPICLGE ATKFSQFLLD SDKRYRVIAK LGERTNTSDS DGEVVETRPI DVTLDKLEAC IEKFRGESDQ VPSMFSALKY QGKPLYEYAR KGIEVPRESR KITVYEIVLH RFEGDEVEME VHCSKGTYIR TIVDDLGEML GCGAHVTMLR RTGVAKYPYE KMVTLEQLNE LLEQAHREER APRELLDPLL LPMDTAVEDL PEVNLVPELA DMVQHGQPVQ VFGAPTEGSL RLTMGEERLF IGVGEMNEDG KIAPKRLVVF RDDVASK
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