Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002587 |
Symbol | |
ID | 8556313 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | - |
Start bp | 1088665 |
End bp | 1092000 |
Gene Length | 3336 bp |
Protein Length | 1111 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 646405676 |
Product | chitin catabolic cascade sensor histidine kinase ChiS |
Protein accession | YP_003285214 |
Protein GI | 262393360 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCAT TTCTGGTGCT CAGTATCACA CCTCTTACTA TTACTGCGAT CTTTTTCCTA CAGTCCCACA GTAAAGATCT GCAAGAGCAA AGCACCTCAC ACTTGTTGTC TGTTAGAGAT ACAAAACAAC AGCAAATTAT CGACTACTTT GAGGCGCGGG AAACTGAAGT CATGGGCTTT GTGCGCTCTG AACTGGCTTA CGCCAGTGGT GGTCGATTCT ACGGTCTCGT CAATGCTTTT AGTCGTTTAG GCAATGACAT TGAAGAATCT CGTAAAAATG CCCAACAGCG CTACATTGAA GGCAGCGGAG ATCAAATCAA AACGTCAACG TTACCCGAGT CTTCCAACTA TGTCGGAAGT GAACGTTACC GACTCTTACA TAAACGTTAC CACTGGGCCT ACTTGGAGCT CCTCAAGCGC TCTGATTTTA ATGATATTTT GCTGGTCGAT ATCAACGGTA ATGTCACCTA CTCGATCAAC AAAGACGATA ACTACGGAAC AAACTTATTA TCAGGCCCCT ACAAAGACTC AGCACTTGGC AAAACCTTCA AGCGTCTAGC TGATGACGTC ACTGAACGCC GTAAGGTGAA TGAAGACTAC ACCCCTGTGA TTGTGTCTGA TTTCGAACTG GAAGGTGGTA AACAAGTCGC TTGGTTAGGT GCTCCAATTG TTCAGCAAGG CTACCTACAC AGCTATGCTA TGTTCCGCTT ACCAAATAAT GGCATCACGA AGTTAGCCGC AGACGCCAAC CGAGAGTCAT CCATTAACAC CTTACTGGTT GGAAATGATC ACCAACCTCG CACAATTAAC ACCAAGCAAG ATGACATTAA GAACAGCTTA GAAGTGATCG ATAAAGCACT CTCTGGTGCA TTTGGCGTCG GCACTTACAC GAACGGTTTA GGTGAAGAGA TCATCGCTGC TTATGCACCG ATTGAAACGC GTGGTGTTAT TTGGGCACTC GTCGTGCAAT TACCAGAAAA CGAAGCTTTC GCTCGTATTC ATCAACTAGA AAAACTGTTT GTTATCGCCA TGCTGATCGC CATCATTCTA GTGGTAATCG CTTCCCATTA TTTATCAAAC TTTATTACTT CTCCGTTGCT GAAGTTAACT TGGGCTGCCG AAAAAGTGTC TGCCGGAGAT CTTGATGACA CTACCTTTAA TACGGTTCGC AAAGATGAAA TTGGCCGTCT TGCGCTGAGT TTTGAACGAA TGCAACGCTC TATTCGAGAG AAAATTCAAA CCATTAAGAA GCAAAATGAA GAGCTCGAGA GCAACATCCA GATCATTCAA AAACAAAATG ATGAATTGCA ATTGGCCGAC AAACTTAAAG ATGAGTTCTT AGCCACCACT TCTCATGAAC TTCGCACACC ATTGCACGGC ATGGTCGGAA TCGCTGAGAC TTTAGCGTCC GGCGCTAACG GTGCTATTCC TGCTAGCCAA AAATATCAGC TTGATATCAT CATTAAAAGT GGGCAACGTC TCGCAAACCT TGTTGATGAC TTATTGGATT ATCATAAAAT GCGTTACGGA AGCATGGATA TCCAGAAGTC AGCGGTGAGT TTAGCCAGTG CAACGCGACT GGTACTAGAG CTTTCCAGCC ATTTACTCGG AAATAAAACC ATCCGTATCA TCAACCAAGT ACCAGCGGAT TTGAAAGTGG TGTCTGCCGA TCCTCAACGC CTTGAACAAG TGTTATATAA CCTGATCGGT AATGCGATTA AGTACACCTC AGAAGGTAAA ATCGTTATCT CCGCCAATGT GGTTGATGAT CATGTTCGTG TGCAAGTTGT GGATACTGGG CAAGGTATTC CCGCAGAACA TCTTGAACAT ATTTTCGAAC CACTTATCCA AGCAGGACAA GACGCAAGTC GCTATCGTCA AGGTGCGGGG CTCGGGCTTT CGATTAGCCG TCAATTGATT GAGTTGATGG GTGGCTCGTT ATACGTCAGC AGCCAGCCTA TGGTCGGCAC CACCTTCAGT TTCACGTTAC CACTTGCCAG TGAAGAAGAG ATCCAAACAA CTCAAACCCT TGCAGCGCAC GGACACTTCC AGATTCCTGA AATCGATGTA GAGAACAATG AAGACTTATC ACTGCCAGAG AATCCAGACG GCCCGTTACT GTATGTCGCT GACGATGAGC CAGTAAACCT GCGTGTGCTT GAGAGTTTCT TACGTTTAGA GGGCTATCGC ATACGTACCG TCTCTGATGG ACCAGAAACA TTAGCACTCG TTGAGCAGGA AAAACCGGAA CTCCTGTTAT TGGATATCAT GATGCCAGGC ATGAGCGGCT ATCAAGTCTG CAGTGAATTA CGTGAAACTT ATGACCATGC CGAGCTACCT ATCATTATGC TAACCGCGCT TAGTCAAACA GAAGATCGTG TACGAGGCTT TGAAGCAGGA GCCAACGACT ATTTGTCTAA GCCATTCAAT AAACAAGAGC TAGCTGCGCG CATCCAAGCG CACTTAACGG CAAGCCAAGC TGAAATGCGC CACATGGAGA ATAAGATACT TGAATCTGAA CTTCGCCAAC GAGCGGCTGT AGAGGCAAGC TTATTAGAAA CTCAAGGGCG ATTGTTGGAA CAACTGGAAT CGGCTCCTGA AGCGATTATC TGTTTGCGTG AAGATAAACG TATCCGGTTT GCTAATGAAG CTGCTTGCAA GCTATTCAAG CGTAACTTAG AACAATTAAA ACGTTCATCT GCCGATGAGT TGATTGCACC TAAGTATCTG ACCGTCAAAC AACCTCATTA CTGTGGCAAG ATTGATATCT ATATTGAAGA TATTCGTCAA AACATCGAAG CAGACATTCT TAAACTACCT GAAGGCTCAG GCTTAGATGT CATGTATATC TTTAATGTTG GCGGAGGAGC CAATGCCGCT CGCATACACA ACCTAGAAAC CGCAGTAGAG GTGCTTTCAA GTTATGCTTT TGATGGCGAT AAAGACCAGC TGCAGAAGCT GAAAGAACTC GGTGGAGAGT TTACACGCCT TGCAGACAAA GCGCTTGGTA ACAAAAAAGA CAAACAAGAG CTAATGCGAG AAATTCTGGT CGACGCAATG ACACATGCCT TAGAGTATTG GGAGTCAGTT ACTGGTGAAA GTAAATTCGC ATTTGCCGAA CAAAGTGGCT TATGGCGCGT TTATCTTGAC CGTAGCACTC TGCAAACACG CACTTTGGAT AAATACATGC GTATAGAAAC GCTGCCAAAA ACGCCACGTT GGAGAACGGT ATTGAGCTCG ATAGAATTCA TCCTTGAACA CTGTAAAGAA CAGAGTCCTG AGCGTGCGTA CATCGAAGCT CAACGAGATA AACTACAGCG ACTGTTGACC AGCTAA
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Protein sequence | MTAFLVLSIT PLTITAIFFL QSHSKDLQEQ STSHLLSVRD TKQQQIIDYF EARETEVMGF VRSELAYASG GRFYGLVNAF SRLGNDIEES RKNAQQRYIE GSGDQIKTST LPESSNYVGS ERYRLLHKRY HWAYLELLKR SDFNDILLVD INGNVTYSIN KDDNYGTNLL SGPYKDSALG KTFKRLADDV TERRKVNEDY TPVIVSDFEL EGGKQVAWLG APIVQQGYLH SYAMFRLPNN GITKLAADAN RESSINTLLV GNDHQPRTIN TKQDDIKNSL EVIDKALSGA FGVGTYTNGL GEEIIAAYAP IETRGVIWAL VVQLPENEAF ARIHQLEKLF VIAMLIAIIL VVIASHYLSN FITSPLLKLT WAAEKVSAGD LDDTTFNTVR KDEIGRLALS FERMQRSIRE KIQTIKKQNE ELESNIQIIQ KQNDELQLAD KLKDEFLATT SHELRTPLHG MVGIAETLAS GANGAIPASQ KYQLDIIIKS GQRLANLVDD LLDYHKMRYG SMDIQKSAVS LASATRLVLE LSSHLLGNKT IRIINQVPAD LKVVSADPQR LEQVLYNLIG NAIKYTSEGK IVISANVVDD HVRVQVVDTG QGIPAEHLEH IFEPLIQAGQ DASRYRQGAG LGLSISRQLI ELMGGSLYVS SQPMVGTTFS FTLPLASEEE IQTTQTLAAH GHFQIPEIDV ENNEDLSLPE NPDGPLLYVA DDEPVNLRVL ESFLRLEGYR IRTVSDGPET LALVEQEKPE LLLLDIMMPG MSGYQVCSEL RETYDHAELP IIMLTALSQT EDRVRGFEAG ANDYLSKPFN KQELAARIQA HLTASQAEMR HMENKILESE LRQRAAVEAS LLETQGRLLE QLESAPEAII CLREDKRIRF ANEAACKLFK RNLEQLKRSS ADELIAPKYL TVKQPHYCGK IDIYIEDIRQ NIEADILKLP EGSGLDVMYI FNVGGGANAA RIHNLETAVE VLSSYAFDGD KDQLQKLKEL GGEFTRLADK ALGNKKDKQE LMREILVDAM THALEYWESV TGESKFAFAE QSGLWRVYLD RSTLQTRTLD KYMRIETLPK TPRWRTVLSS IEFILEHCKE QSPERAYIEA QRDKLQRLLT S
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