Gene VEA_002587 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVEA_002587 
Symbol 
ID8556313 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio sp. Ex25 
KingdomBacteria 
Replicon accessionNC_013456 
Strand
Start bp1088665 
End bp1092000 
Gene Length3336 bp 
Protein Length1111 aa 
Translation table11 
GC content45% 
IMG OID646405676 
Productchitin catabolic cascade sensor histidine kinase ChiS 
Protein accessionYP_003285214 
Protein GI262393360 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCGCAT TTCTGGTGCT CAGTATCACA CCTCTTACTA TTACTGCGAT CTTTTTCCTA 
CAGTCCCACA GTAAAGATCT GCAAGAGCAA AGCACCTCAC ACTTGTTGTC TGTTAGAGAT
ACAAAACAAC AGCAAATTAT CGACTACTTT GAGGCGCGGG AAACTGAAGT CATGGGCTTT
GTGCGCTCTG AACTGGCTTA CGCCAGTGGT GGTCGATTCT ACGGTCTCGT CAATGCTTTT
AGTCGTTTAG GCAATGACAT TGAAGAATCT CGTAAAAATG CCCAACAGCG CTACATTGAA
GGCAGCGGAG ATCAAATCAA AACGTCAACG TTACCCGAGT CTTCCAACTA TGTCGGAAGT
GAACGTTACC GACTCTTACA TAAACGTTAC CACTGGGCCT ACTTGGAGCT CCTCAAGCGC
TCTGATTTTA ATGATATTTT GCTGGTCGAT ATCAACGGTA ATGTCACCTA CTCGATCAAC
AAAGACGATA ACTACGGAAC AAACTTATTA TCAGGCCCCT ACAAAGACTC AGCACTTGGC
AAAACCTTCA AGCGTCTAGC TGATGACGTC ACTGAACGCC GTAAGGTGAA TGAAGACTAC
ACCCCTGTGA TTGTGTCTGA TTTCGAACTG GAAGGTGGTA AACAAGTCGC TTGGTTAGGT
GCTCCAATTG TTCAGCAAGG CTACCTACAC AGCTATGCTA TGTTCCGCTT ACCAAATAAT
GGCATCACGA AGTTAGCCGC AGACGCCAAC CGAGAGTCAT CCATTAACAC CTTACTGGTT
GGAAATGATC ACCAACCTCG CACAATTAAC ACCAAGCAAG ATGACATTAA GAACAGCTTA
GAAGTGATCG ATAAAGCACT CTCTGGTGCA TTTGGCGTCG GCACTTACAC GAACGGTTTA
GGTGAAGAGA TCATCGCTGC TTATGCACCG ATTGAAACGC GTGGTGTTAT TTGGGCACTC
GTCGTGCAAT TACCAGAAAA CGAAGCTTTC GCTCGTATTC ATCAACTAGA AAAACTGTTT
GTTATCGCCA TGCTGATCGC CATCATTCTA GTGGTAATCG CTTCCCATTA TTTATCAAAC
TTTATTACTT CTCCGTTGCT GAAGTTAACT TGGGCTGCCG AAAAAGTGTC TGCCGGAGAT
CTTGATGACA CTACCTTTAA TACGGTTCGC AAAGATGAAA TTGGCCGTCT TGCGCTGAGT
TTTGAACGAA TGCAACGCTC TATTCGAGAG AAAATTCAAA CCATTAAGAA GCAAAATGAA
GAGCTCGAGA GCAACATCCA GATCATTCAA AAACAAAATG ATGAATTGCA ATTGGCCGAC
AAACTTAAAG ATGAGTTCTT AGCCACCACT TCTCATGAAC TTCGCACACC ATTGCACGGC
ATGGTCGGAA TCGCTGAGAC TTTAGCGTCC GGCGCTAACG GTGCTATTCC TGCTAGCCAA
AAATATCAGC TTGATATCAT CATTAAAAGT GGGCAACGTC TCGCAAACCT TGTTGATGAC
TTATTGGATT ATCATAAAAT GCGTTACGGA AGCATGGATA TCCAGAAGTC AGCGGTGAGT
TTAGCCAGTG CAACGCGACT GGTACTAGAG CTTTCCAGCC ATTTACTCGG AAATAAAACC
ATCCGTATCA TCAACCAAGT ACCAGCGGAT TTGAAAGTGG TGTCTGCCGA TCCTCAACGC
CTTGAACAAG TGTTATATAA CCTGATCGGT AATGCGATTA AGTACACCTC AGAAGGTAAA
ATCGTTATCT CCGCCAATGT GGTTGATGAT CATGTTCGTG TGCAAGTTGT GGATACTGGG
CAAGGTATTC CCGCAGAACA TCTTGAACAT ATTTTCGAAC CACTTATCCA AGCAGGACAA
GACGCAAGTC GCTATCGTCA AGGTGCGGGG CTCGGGCTTT CGATTAGCCG TCAATTGATT
GAGTTGATGG GTGGCTCGTT ATACGTCAGC AGCCAGCCTA TGGTCGGCAC CACCTTCAGT
TTCACGTTAC CACTTGCCAG TGAAGAAGAG ATCCAAACAA CTCAAACCCT TGCAGCGCAC
GGACACTTCC AGATTCCTGA AATCGATGTA GAGAACAATG AAGACTTATC ACTGCCAGAG
AATCCAGACG GCCCGTTACT GTATGTCGCT GACGATGAGC CAGTAAACCT GCGTGTGCTT
GAGAGTTTCT TACGTTTAGA GGGCTATCGC ATACGTACCG TCTCTGATGG ACCAGAAACA
TTAGCACTCG TTGAGCAGGA AAAACCGGAA CTCCTGTTAT TGGATATCAT GATGCCAGGC
ATGAGCGGCT ATCAAGTCTG CAGTGAATTA CGTGAAACTT ATGACCATGC CGAGCTACCT
ATCATTATGC TAACCGCGCT TAGTCAAACA GAAGATCGTG TACGAGGCTT TGAAGCAGGA
GCCAACGACT ATTTGTCTAA GCCATTCAAT AAACAAGAGC TAGCTGCGCG CATCCAAGCG
CACTTAACGG CAAGCCAAGC TGAAATGCGC CACATGGAGA ATAAGATACT TGAATCTGAA
CTTCGCCAAC GAGCGGCTGT AGAGGCAAGC TTATTAGAAA CTCAAGGGCG ATTGTTGGAA
CAACTGGAAT CGGCTCCTGA AGCGATTATC TGTTTGCGTG AAGATAAACG TATCCGGTTT
GCTAATGAAG CTGCTTGCAA GCTATTCAAG CGTAACTTAG AACAATTAAA ACGTTCATCT
GCCGATGAGT TGATTGCACC TAAGTATCTG ACCGTCAAAC AACCTCATTA CTGTGGCAAG
ATTGATATCT ATATTGAAGA TATTCGTCAA AACATCGAAG CAGACATTCT TAAACTACCT
GAAGGCTCAG GCTTAGATGT CATGTATATC TTTAATGTTG GCGGAGGAGC CAATGCCGCT
CGCATACACA ACCTAGAAAC CGCAGTAGAG GTGCTTTCAA GTTATGCTTT TGATGGCGAT
AAAGACCAGC TGCAGAAGCT GAAAGAACTC GGTGGAGAGT TTACACGCCT TGCAGACAAA
GCGCTTGGTA ACAAAAAAGA CAAACAAGAG CTAATGCGAG AAATTCTGGT CGACGCAATG
ACACATGCCT TAGAGTATTG GGAGTCAGTT ACTGGTGAAA GTAAATTCGC ATTTGCCGAA
CAAAGTGGCT TATGGCGCGT TTATCTTGAC CGTAGCACTC TGCAAACACG CACTTTGGAT
AAATACATGC GTATAGAAAC GCTGCCAAAA ACGCCACGTT GGAGAACGGT ATTGAGCTCG
ATAGAATTCA TCCTTGAACA CTGTAAAGAA CAGAGTCCTG AGCGTGCGTA CATCGAAGCT
CAACGAGATA AACTACAGCG ACTGTTGACC AGCTAA
 
Protein sequence
MTAFLVLSIT PLTITAIFFL QSHSKDLQEQ STSHLLSVRD TKQQQIIDYF EARETEVMGF 
VRSELAYASG GRFYGLVNAF SRLGNDIEES RKNAQQRYIE GSGDQIKTST LPESSNYVGS
ERYRLLHKRY HWAYLELLKR SDFNDILLVD INGNVTYSIN KDDNYGTNLL SGPYKDSALG
KTFKRLADDV TERRKVNEDY TPVIVSDFEL EGGKQVAWLG APIVQQGYLH SYAMFRLPNN
GITKLAADAN RESSINTLLV GNDHQPRTIN TKQDDIKNSL EVIDKALSGA FGVGTYTNGL
GEEIIAAYAP IETRGVIWAL VVQLPENEAF ARIHQLEKLF VIAMLIAIIL VVIASHYLSN
FITSPLLKLT WAAEKVSAGD LDDTTFNTVR KDEIGRLALS FERMQRSIRE KIQTIKKQNE
ELESNIQIIQ KQNDELQLAD KLKDEFLATT SHELRTPLHG MVGIAETLAS GANGAIPASQ
KYQLDIIIKS GQRLANLVDD LLDYHKMRYG SMDIQKSAVS LASATRLVLE LSSHLLGNKT
IRIINQVPAD LKVVSADPQR LEQVLYNLIG NAIKYTSEGK IVISANVVDD HVRVQVVDTG
QGIPAEHLEH IFEPLIQAGQ DASRYRQGAG LGLSISRQLI ELMGGSLYVS SQPMVGTTFS
FTLPLASEEE IQTTQTLAAH GHFQIPEIDV ENNEDLSLPE NPDGPLLYVA DDEPVNLRVL
ESFLRLEGYR IRTVSDGPET LALVEQEKPE LLLLDIMMPG MSGYQVCSEL RETYDHAELP
IIMLTALSQT EDRVRGFEAG ANDYLSKPFN KQELAARIQA HLTASQAEMR HMENKILESE
LRQRAAVEAS LLETQGRLLE QLESAPEAII CLREDKRIRF ANEAACKLFK RNLEQLKRSS
ADELIAPKYL TVKQPHYCGK IDIYIEDIRQ NIEADILKLP EGSGLDVMYI FNVGGGANAA
RIHNLETAVE VLSSYAFDGD KDQLQKLKEL GGEFTRLADK ALGNKKDKQE LMREILVDAM
THALEYWESV TGESKFAFAE QSGLWRVYLD RSTLQTRTLD KYMRIETLPK TPRWRTVLSS
IEFILEHCKE QSPERAYIEA QRDKLQRLLT S