| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002525 |
|---|
| Symbol | |
|---|
| ID | 8556251 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | + |
|---|
| Start bp | 1011117 |
|---|
| End bp | 1012901 |
|---|
| Gene Length | 1785 bp |
|---|
| Protein Length | 594 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646405614 |
|---|
| Product | oxaloacetate decarboxylase alpha chain |
|---|
| Protein accession | YP_003285152 |
|---|
| Protein GI | 262393298 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG5016] Pyruvate/oxaloacetate carboxyltransferase |
|---|
| TIGRFAM ID | [TIGR01108] oxaloacetate decarboxylase alpha subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.450431 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTAAAC CACTAGCTAT TACAGATGTG GTCCTTCGTG ATGCCCATCA ATCACTATTT
GCCACGCGTA TGCGTATTGA GGATATGCTG CCTATCGCAG CTGAGTTGGA TAAGGTTGGT
TACTGGTCTC TAGAGACTTG GGGTGGCGCA ACGTTTGATT CTTGTATTCG ATTCTTAGGG
GAAGACCCTT GGGAGCGTTT ACGTGAGCTG AAAAAAGCGA TGCCTAATAC GCCAATGCAA
ATGCTACTGC GTGGTCAAAA CCTTTTAGGA TACCGCCATT ATGCCGACGA CGTAGTAGAG
AAGTTCGTTG AACGCGCACA TGCTAACGGT ATGGACGTAT TCCGTATCTT TGATGCAATG
AATGACGTGC GAAACTTCCA GAAGGCTGTT AAAGCAACGG TCGATGTTGG CGCACATGCT
CAAGGTACGC TGTCTTACAC AACAAGCCCT GTGCATAACG CAGACACTTG GGTTGACTTG
GCAAAACGCC TAGAGGATTT AGGTTGTCAT TCACTGTGTA TTAAAGATAT GTCTGGCTTA
CTCAAGCCTT ATGAAGCGGA AGAGCTTATC ACGCGTATCA AAGCGTCTTG TGATGTGCCA
TTAGCACTTC ATTGTCACGC GACGACAGGC TTGTCTACTG CGACAGCGGT AAAAGCAGTT
GAAGCTGGTA TTGATATTCT CGATACAGCG ATTTCTTCAA TGAGTTGTAC CTATGGCCAC
ACGCCGACGG AAACGGTAGT CGCGATGCTA GAAGGAACCG AGCGAGATAC GAATTTGAAG
CTCAAGCAAC TAGAACCTAT CGCCGCGTAT TTCCGTGAAG TACGTAAGAA GTACGCGAAG
TGGGAAGGTC AGTTGAAAGG TGTAGACTCT CGCATCCTGA TTGCTCAAGT GCCTGGCGGC
ATGCTGACCA ACATGGAAGG CCAGCTGAAA GAACAGGGCG CGGCGGATCG CATTGATGAA
GTCTTAGAAG AGATCCCTCG TGTACGCGAA GATCTTGGTT TCATTCCATT GGTGACTCCA
ACTTCGCAGA TCGTCGGAAC GCAAGCGGTG ATTAACGTGC TTACTGGCGA ACGCTATAAG
AGCATCACTA AGGAAACCGC TGGTCTATTG AAAGGCGAAT ACGGTCAAGC GCCAGCCGAG
TTAAATACAG AGCTGCAAGC TAAAGTACTT GATGGCAAAG AGCCTATTAC TTGTCGTCCT
GCCGATTTGC TTGAGCCTGA AATGGAGACG CTTACTGTTG ATCTGATGGA GAAAGCGAAA
TCAGAAGGTA TTAAGCTAGC AAGTGAGCGT GTTGATGATG TACTTACTTA TGCGCTTTTC
CCTCAAGTTG GTCTCAAGTT CCTTAAGAAT CGTGAAAACC CAGAAGCATT TGAACCTGCA
CCAACGCTAG AAGCCGCGAA GCCTGCCGTA CCTGCGGCGC AACCAGCAAC TGGCGGCGTA
GAAACTTATA GCGTACGTGT TGACGGACAG GTGTATGAGG TGGAAGTTGG TCCTCAAGGC
GAGCTAACCT CTGTCGCTCC TTCTGCGGCG CCTGCAAAAT CGACGGCACC TAGCGCTCCT
TCTAGCGCTT CTGCTGAAGC GGTGCCTGCT CCTCTTGCCG GTAACATCTT TAAAGTGAAT
GTTCAGCCTG GTGCTGAAGT GGCTGAAGGC GATGTACTAC TCATCCTTGA AGCAATGAAG
ATGGAAACAG AAGTGCGTGC GGCGCGTGGT GGTGTTGTCC AAGAGTTGAA CGTTAAAGAA
GGCGATGCTG TCACAGTAGG TGCGCCTCTG CTGAGCCTGG CGTAA
|
|---|
| Protein sequence | MSKPLAITDV VLRDAHQSLF ATRMRIEDML PIAAELDKVG YWSLETWGGA TFDSCIRFLG
EDPWERLREL KKAMPNTPMQ MLLRGQNLLG YRHYADDVVE KFVERAHANG MDVFRIFDAM
NDVRNFQKAV KATVDVGAHA QGTLSYTTSP VHNADTWVDL AKRLEDLGCH SLCIKDMSGL
LKPYEAEELI TRIKASCDVP LALHCHATTG LSTATAVKAV EAGIDILDTA ISSMSCTYGH
TPTETVVAML EGTERDTNLK LKQLEPIAAY FREVRKKYAK WEGQLKGVDS RILIAQVPGG
MLTNMEGQLK EQGAADRIDE VLEEIPRVRE DLGFIPLVTP TSQIVGTQAV INVLTGERYK
SITKETAGLL KGEYGQAPAE LNTELQAKVL DGKEPITCRP ADLLEPEMET LTVDLMEKAK
SEGIKLASER VDDVLTYALF PQVGLKFLKN RENPEAFEPA PTLEAAKPAV PAAQPATGGV
ETYSVRVDGQ VYEVEVGPQG ELTSVAPSAA PAKSTAPSAP SSASAEAVPA PLAGNIFKVN
VQPGAEVAEG DVLLILEAMK METEVRAARG GVVQELNVKE GDAVTVGAPL LSLA
|
|---|
| |