| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002392 |
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| Symbol | |
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| ID | 8556087 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 864844 |
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| End bp | 867753 |
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| Gene Length | 2910 bp |
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| Protein Length | 969 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 646405450 |
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| Product | RNA polymerase associated protein RapA |
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| Protein accession | YP_003285019 |
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| Protein GI | 262393165 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0553] Superfamily II DNA/RNA helicases, SNF2 family |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000609656 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACATTTG CTTTGGGGCA GCGCTGGATT AGCGATACGG AAAGCGATTT AGGTTTAGGT
ACCGTTGTAG CAATGGATGC TCGTACTGTG ACATTGATGT TTGCAGCGTC AGAGGAAAAC
CGAGTTTACG CACGTAACGA TGCACCTGTT ACCCGAGTCA CTTTTAACGT TGGTGATGTC
ATCGACTGCC AAGAAGGTTG GTCTCTAAAA GTTGAAGAAG TACTGGAAGA TGAAGGCCTA
TACACCTATT TCGGTACTCG TGAAGACACG CAAGAAACCG CCGTTGTTCT GCGTGAGATT
TTTCTGAGCA ACCAAATTCG TTTTAACAAA CCTCAAGATA AGTTGTACGC CGGTCAAATC
GACCGTATGG ACAACTTTGT TCTGCGTTAC CGTGCGCTAA CCAACCAGTT TGAGCAGCAT
AAGAGCCCAA TGCGTGGCCT ATGTGGTATG CGTGCAGGTT TGATCCCTCA TCAGCTTTAC
ATCGCGCACG AAGTTGGCCG TCGCCACGCG CCACGCGTAT TACTGGCGGA TGAAGTGGGT
TTGGGTAAAA CCATCGAAGC GGGCATGATC ATCCACCAAC AAGTTCTGTC TGGTCGTGCC
GAACGCATTT TGATTGTGGT GCCTGAAACA CTGCAGCATC AATGGCTGGT TGAGATGATG
CGTCGTTTCA ATCTGCATTT CTCTATCTTT GATGAAGAGC GCTGTATCGA AGCTTTTGCG
GATGCAGAAA ACCCATTTGA TACTCAGCAA TATGTGCTGT GTTCTTTGGA CTTCCTACGC
AAGAGCCGCA AGCGTTTTGA ACAAGCACTG GAAGGCGAAT GGGACCTATT AGTTGTCGAT
GAAGCGCATC ACCTTGAGTG GAGCCAAGAT AAACCGAGCC GTGAATATCA AGTGGTAGAA
GGTTTAGCTG AACGCACTCC GGGCGTACTG CTATTGACGG CAACGCCAGA ACAGCTTGGT
CGTGAGAGCC ACTTTGCTCG TCTGCGTTTG CTGGATCCTG ACCGTTTCTA CGATTACGAA
GCGTTCGTCG AGGAAGAAGA ACAATACGCG CCTGTAGCGG ATGCGATTAC TTCACTCTTC
TCTGGTGAAA AACTGCCTGA TGAAGCGAAA AACCAGATCA CTGAGTTGCT GTCTGAACAA
GACGTAGAAC CACTTTTCCG CATTATCGAA AGTGAAGCGG ACGAAGAAGC TAAAGCGTCA
GCGCGCCAAG AGTTGATCGA CAACTTGATG GATCGTCACG GTACGGGACG TGTTCTGTTC
CGTAACACAC GTGCGGCTAT CAAAGGTTTC CCTGCGCGTA ACGTGCATCT GATGCCAATG
GATATTCCAC CGCAATACAC CACGTCAATG CGTGTTGCTG GGATGATCGG CGGTAAGATG
AGTTCTGAAG CACGTGCGAT GAAGAACCTT TACCCGGAAG AAATTTTCCA AGAATTTGAA
GGCGATGACG CAAGCTGGTG GCAGTTTGAC TCGCGCGTGA ATTGGTTACT TGAAAAGGTA
AAGGAGAAGC GCAGCGAGAA AATTCTGGTG ATTGCCTCTC GTGCAAGTAC GGCTCTGCAA
TTGGAGCAAG CACTGCGTGA GCGTGAAGGC ATTCGTGCGA CCGTCTTCCA TGAAGGTATG
TCGATTCTTG AGCGTGACAA AGCAGCCGCT TACTTTGCGC AAGAAGAAGG TGGTGCACAG
GTTCTTATCT GTAGTGAAAT CGGCTCTGAA GGCCGTAACT TCCAGTTTGC CAACCAATTA
GTCATGTTTG ACTTGCCGTT CAACCCTGAC TTGCTTGAGC AACGTATTGG TCGTTTGGAC
CGTATCGGCC AAAACCGTGA CATCGACATT CATATTCCTT ACCTGAAAGG TACCTCGCAA
GCCATTCTTG CTCGCTGGTT TGATGAAGGT TTAAACGCTT TTGCAGAAAC TTGCCCAACA
GGCCGTGCCG TTTACGATAA GTATTCTGAT GACTTGATTG AAATCCTTGC TTCTGGTGAC
ACCAGCACGC TAGATGAGAT CATTGAAGCG TCAGCAAAAA TGAATAAAGA GCTGAAATCC
CAATTGGAGC AAGGCCGTGA TCGCCTATTA GAAATGCATT CAAATGGCGG AGAAAAGGCA
CAACAAATCG TTGAGAAAAT TGAATCAACC GACGGTGATA CCAATCTGGT CACCTTCGCA
CTTTCTCTTT TTGATACGAT TGGCTTGAAC CAAGACGATA AAGGTGAAAA CGCACTGATT
GTGACCCCAT CTGAGCACAT GATGGTACCA AGCTACCCAG GTCTGCCATA CGAAGGAGCG
ACGATCACGT TTGATCGTGA TACGGCTTTA TCTCGTGAAG ATATGCACTT TATCAGTTGG
GAGCATCCAA TGATCCAGGG GGGTATCGAT CTTCTGATGA GTGAAGGGGT GGGGACGTCT
GCGGTATCTC TACTGAAAAA CAAAGCGTTA CCAGTTGGGA CCATTCTTCT TGAGTTGATT
TACGCGGTAG ATGCGCAAGC GCCAAAACGC AGTGGTATCG CGCGCTTCTT ACCGAAAACG
CCAATCCGTT TGATGATGGA CTCGCGTGGT AATGATTTGT CTGCTCAAGT GGAATTTGAA
AGCTTTAACC GCCAGCTCAG CCCTGTAAAC CGTCACTTAG GCAGCAAGTT GGTCACGTCG
GTACAGAAAG ACGTACACCG CTTAATTGAA GCGGGGGACA ATCTTATCGA AGCGAAGGTT
GAGGAAGTAC GCAAGCAAGC TCATCAAGAT ATGCAGCATA GCTTGAATGC AGAACTTGAG
CGTTTGCAAG CACTGAAAGC GGTAAACCCA AATATTCGTG ATGAAGAAAT TGAAGCCATT
GATGCACAAA TTAAGGAGCT CACTGGTTAC ATCAACCAAG CTCAAGTGCA GCTCGACTCG
CTACGTTTGA TTGTGGTGAG CCACAACTAA
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| Protein sequence | MTFALGQRWI SDTESDLGLG TVVAMDARTV TLMFAASEEN RVYARNDAPV TRVTFNVGDV
IDCQEGWSLK VEEVLEDEGL YTYFGTREDT QETAVVLREI FLSNQIRFNK PQDKLYAGQI
DRMDNFVLRY RALTNQFEQH KSPMRGLCGM RAGLIPHQLY IAHEVGRRHA PRVLLADEVG
LGKTIEAGMI IHQQVLSGRA ERILIVVPET LQHQWLVEMM RRFNLHFSIF DEERCIEAFA
DAENPFDTQQ YVLCSLDFLR KSRKRFEQAL EGEWDLLVVD EAHHLEWSQD KPSREYQVVE
GLAERTPGVL LLTATPEQLG RESHFARLRL LDPDRFYDYE AFVEEEEQYA PVADAITSLF
SGEKLPDEAK NQITELLSEQ DVEPLFRIIE SEADEEAKAS ARQELIDNLM DRHGTGRVLF
RNTRAAIKGF PARNVHLMPM DIPPQYTTSM RVAGMIGGKM SSEARAMKNL YPEEIFQEFE
GDDASWWQFD SRVNWLLEKV KEKRSEKILV IASRASTALQ LEQALREREG IRATVFHEGM
SILERDKAAA YFAQEEGGAQ VLICSEIGSE GRNFQFANQL VMFDLPFNPD LLEQRIGRLD
RIGQNRDIDI HIPYLKGTSQ AILARWFDEG LNAFAETCPT GRAVYDKYSD DLIEILASGD
TSTLDEIIEA SAKMNKELKS QLEQGRDRLL EMHSNGGEKA QQIVEKIEST DGDTNLVTFA
LSLFDTIGLN QDDKGENALI VTPSEHMMVP SYPGLPYEGA TITFDRDTAL SREDMHFISW
EHPMIQGGID LLMSEGVGTS AVSLLKNKAL PVGTILLELI YAVDAQAPKR SGIARFLPKT
PIRLMMDSRG NDLSAQVEFE SFNRQLSPVN RHLGSKLVTS VQKDVHRLIE AGDNLIEAKV
EEVRKQAHQD MQHSLNAELE RLQALKAVNP NIRDEEIEAI DAQIKELTGY INQAQVQLDS
LRLIVVSHN
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