| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_002364 |
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| Symbol | |
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| ID | 8556059 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | + |
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| Start bp | 832382 |
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| End bp | 834391 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 44% |
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| IMG OID | 646405422 |
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| Product | MSHA biogenesis protein MshH |
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| Protein accession | YP_003284991 |
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| Protein GI | 262393137 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.90325 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGGTATA CCCCAACTCT TAAGTTAAGC ACACGGCTGG TGGCTTTTGT CACCATGATC
GTCATCTGCG CCATGTTTAT CTTGTTTGTC GGTGGCACCC TCTCTTTTAA GCGTCTTGGG
CAGGAATATC TCACCCATTA TTTAGAAGGG ATCGTAGAGG TGGTCGACAA GGAGATGGAA
GATCCTGACG CTGCTTATTC TATGCAGCGC TGGATGCCGA AAATGCTGCA GGCTTCCAAT
ATTGTCGAAA TGACATTGTC GACCAACAAT GCGGTTGTTT ATCGCTTCAA AGATACTTCT
CATCAAATGG AAGCGTCAGT CTTGTTTGAG ACAGAATACC AACTGACTCA CAATCAAGAT
TACACGATTC ATTTTAAAGC GATCCCGCCT TACTTAGGTT ACAGCTACTC AATGCAGGCG
CTTTGGTCGA TCACGCTTGC CGTTATCTTG ATCATCTTCT GTTTAATGCG TGGCGTTGCG
TGGCTTAAGG AGCAATTAGA AGGCTCTGAA ATGCTCGAAG AGCGAGGCAG GATGATCCTT
GCTGGTCGGG TAGAGCAGTA TGCAAAAGGT GACAAAAAAG AATGGCCTTA TACTGCCAGT
GAAGCGCTCG ATGTATTAAT TGAAGAGTTA CAAGATGCGC GTCAAGAGCG AAGTCGATTT
GATACCTTTA TTCGCACTCA AACCTTCCTT GATAAGTTAA CAGGTACCGC CAATCGAGTG
CTATTTGATA GCAAACTGGA ATCGGCGTTA CTAGAAAGTG GGGCTCGCGG CGCCGTGTTG
CTAGTACGTA TTCAAGACTG GAAACTGGTT GAAGAAGAGC AAGATAAGCA AATTACGGAT
GAGTTTATTG TTGAAGTTGG GAGTTTATTA TCCAACTTAG TTCAGCGATA TCCTGATGTT
GTATTTTCTC GTTATTACGA TGCTGATTTT GCGTTATTTC TGCCGCATCA AAGTGCCAAA
GATGTGGCTA ATTTGGCATC ACAATGCATT CGCCAGTTAG AAAAATTAAT TCCGCCAGAG
CCACTCGACC CAGATAACTG GTGTCATATC GGCATCACTA CTTATAAAGA GGGTGAGCGA
CACAGCCAAA TCATCGATGA GGCAGAGACA GCTTTGCGTA GTGCGCAACT ACAAAATAAC
AATAATTGGA GTCGCTTCAA AAAATGGAAC CACGATGAAG AAGCTCGCGG AAGTGTGAGG
TGGAGAACGT TATTTGACAC AGCACTTACA CCAGAAAATG TGATACTCTA CGCACAATCT
GTGCACCCAA TAAGTGATGC GACGCATAAA AAATCATTAT ATGAAGAGTT AACATGTCGG
ATTCGCGATC CTGAGAATGG CATTGTTAAA GCGTCTCGGT TTATTTCTGC GATCAGACAG
GTTGGTTATG AAGCGCAAAT GGATAAGTCA GTTATTAATA AATTCTTAAG AGACTTTAAG
GATAATTTTG ATAACTCAAG ATCGTATGCG CTCAATTTGA ATGTAACGCC TTTTTCTAAC
CGAGAGTACT TTAAATGGTT TCGTGATGAA CTCTTACAGT TGTCACGTGA ACAGAGAAAG
TGTCTCAGTT TTGAGTTTGT TGAAGCACAA TTTGTAAGAC ACTTAGACTT TATGCGACCA
GTCGCTAAAA TGCTGGCCGG TTTAGGGTGC CACTTAATGG TTGGGCAGGC TGGACGAACC
ATCGTCAGCA CTCACTATTT AAAAGAAGTG GATATTCGTT ACCTTAAACT TCATCGCAGT
TTAGTAGCAA AAATCGACCA GCGACATGAG AACCAGCTAT TTGTCCGCAG CATGCTAGGT
GCCGCGGCAA ACAGTAAAAC TAAAATCATA GCAGTGGGAA TTGAGAATCA ACACGAGCTC
AACACGTTAA TTGAGCTCGG GGTTTATGGT GGGCAAGGGC GCTACTTCTC TGCAGAGCAG
CAGTTTCTTC CTCGTCCACA AGCATTGCCA AGTTCTCAAT CAGAATCCCA AGTGAAATTG
GGAAGACGAA ATCGCTGGCG TAAAAAATAA
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| Protein sequence | MRYTPTLKLS TRLVAFVTMI VICAMFILFV GGTLSFKRLG QEYLTHYLEG IVEVVDKEME
DPDAAYSMQR WMPKMLQASN IVEMTLSTNN AVVYRFKDTS HQMEASVLFE TEYQLTHNQD
YTIHFKAIPP YLGYSYSMQA LWSITLAVIL IIFCLMRGVA WLKEQLEGSE MLEERGRMIL
AGRVEQYAKG DKKEWPYTAS EALDVLIEEL QDARQERSRF DTFIRTQTFL DKLTGTANRV
LFDSKLESAL LESGARGAVL LVRIQDWKLV EEEQDKQITD EFIVEVGSLL SNLVQRYPDV
VFSRYYDADF ALFLPHQSAK DVANLASQCI RQLEKLIPPE PLDPDNWCHI GITTYKEGER
HSQIIDEAET ALRSAQLQNN NNWSRFKKWN HDEEARGSVR WRTLFDTALT PENVILYAQS
VHPISDATHK KSLYEELTCR IRDPENGIVK ASRFISAIRQ VGYEAQMDKS VINKFLRDFK
DNFDNSRSYA LNLNVTPFSN REYFKWFRDE LLQLSREQRK CLSFEFVEAQ FVRHLDFMRP
VAKMLAGLGC HLMVGQAGRT IVSTHYLKEV DIRYLKLHRS LVAKIDQRHE NQLFVRSMLG
AAANSKTKII AVGIENQHEL NTLIELGVYG GQGRYFSAEQ QFLPRPQALP SSQSESQVKL
GRRNRWRKK
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