Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_002141 |
Symbol | |
ID | 8555796 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013456 |
Strand | + |
Start bp | 558858 |
End bp | 559715 |
Gene Length | 858 bp |
Protein Length | 285 aa |
Translation table | 11 |
GC content | 47% |
IMG OID | 646405160 |
Product | RNA polymerase sigma factor RpoH |
Protein accession | YP_003284769 |
Protein GI | 262392915 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000181562 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAAAG AAGCGTATCC GATGGCTCTA GTCACGCAAG ATAGCCTTGA TAGCTATATT CGCTCAGTAA ACAGCTACCC AATGCTGACT GCAGACGAAG AGCGTGAGCT GGCAGAACGA TTACACTACA AAGGTGAGAT TGAGGCTGCA AAAGGTCTAA TTCTTTCGCA CCTACGATTC GTTGTTCACG TTGCTCGTGG TTACTCTGGC TACGGTTTGC CAATGGCGGA CCTTGTGCAA GAGGGTAACA TCGGTCTAAT GAAAGCCGTT AAGCGTTTTA ACCCAGAAGT AGGGGTTCGC TTGGTGTCTT TTGCTGTCCA CTGGATCAAA GCAGAGATCC ACGAATACGT GCTACGTAAC TGGCGTATCG TGAAAATTGC GACCACTAAA GCGCAACGTA AGTTGTTCTT CAACTTGCGT AAGTCGAAAA AGCGCTTGGG TTGGTTTAAC AACGGTGAAG TCGAAACCGT TGCGCGTGAG TTAGGTGTTG AGCCTTCTGA AGTTCGCGAG ATGGAATCAC GCTTAGCGGC GGTGGATTCA ACCTTTGATA TGCCAACTGA TGAAGACGAC AGCTCAAACG CTTACACAGC GCCGATGCTG TACCTAGAAG ACAAATCGTC TGATGTGGCT GACAACATCG AAGCTGCAAA CTGGGAAATG CACACCAACA ATCGCTTGGG TCATGCATTA GCGAGTTTAG ATGAACGTAG TCAGCGTATC GTGCGTTCTC GTTGGTTAGA TGATGAGAAA GCAACATTGC AAGACTTAGC TGATGAGTTT GGTGTGTCTG CCGAGCGTAT TCGTCAGCTA GAAAAAAACG CAATGAAGAA ACTAAAATTG GCCGTGGGTG AATTTTAA
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Protein sequence | MTKEAYPMAL VTQDSLDSYI RSVNSYPMLT ADEERELAER LHYKGEIEAA KGLILSHLRF VVHVARGYSG YGLPMADLVQ EGNIGLMKAV KRFNPEVGVR LVSFAVHWIK AEIHEYVLRN WRIVKIATTK AQRKLFFNLR KSKKRLGWFN NGEVETVARE LGVEPSEVRE MESRLAAVDS TFDMPTDEDD SSNAYTAPML YLEDKSSDVA DNIEAANWEM HTNNRLGHAL ASLDERSQRI VRSRWLDDEK ATLQDLADEF GVSAERIRQL EKNAMKKLKL AVGEF
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