| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001891 |
|---|
| Symbol | |
|---|
| ID | 8555520 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013456 |
|---|
| Strand | - |
|---|
| Start bp | 279339 |
|---|
| End bp | 280841 |
|---|
| Gene Length | 1503 bp |
|---|
| Protein Length | 500 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646404884 |
|---|
| Product | general secretion pathway protein E |
|---|
| Protein accession | YP_003284519 |
|---|
| Protein GI | 262392665 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTGATA TGTTAGACAC AGCGCCAAGT ATGCGTCGTC TGCCATTCAG TTTTGCCAAT
CGCTTTAAAC TGGTGCTGGA GACAGAGCAT CCTGAGCGTC CGCCCATTCT TTACTATGTC
GAGCCGCTCA ACCCAGCGGC TCTGGTCGAA GTCCGTCGTG TGCTGAAGAA AAGCTTCGTA
CCGCAGCCTA TCGATAAAGA AGCCTTTGAT AAAAAGCTGA CCGAAGCATA TCAACGTGAC
TCGTCTGAAG CGCGTCAATT GATGGAAGAC ATCGGTGCCG ATAGCGACGA CTTTTTCTCA
TTGGCTGAAG AGCTGCCGCA TGATGAAGAC TTGCTAGAGT CAGAAGACGA TGCACCAATC
ATTAAGTTGA TCAATGCGAT GTTGGGTGAA GCAATTAAAG AAGGGGCGTC GGATATTCAT
ATCGAAACTT TCGAGAAAAC CCTTTCGATT CGTTTCCGTG TCGATGGCGT ATTGCGTGAA
GTGCTCACTC CAAGTCGTAA GCTTGCACCA CTGTTAGTGT CGCGAGTGAA GGTCATGGCG
AAGCTGGATA TTGCAGAAAA GCGTGTACCT CAAGATGGTC GTATCTCGTT GCGTATTGGT
GGTCGTGCGG TTGATGTGCG TGTTTCTACA ATGCCGTCGT CACATGGTGA GCGAGTAGTT
ATGCGTCTGT TGGATAAAAA CGCGACGCGT CTCGATTTGC ATAGCTTAGG TATGACGCCG
TCCGTACACG ACAATTTCCG TCATCTTATT CAGCGTCCTC ACGGTATCAT CTTGGTCACC
GGCCCGACGG GTTCTGGTAA GTCGACGACT TTGTACGCTG GCTTGCAAGA GATCAACAGT
AACGAACGCA ATATCTTAAC GGTTGAAGAC CCGATCGAAT TTGATATTGA TGGCATCGGT
CAGACTCAGG TGAACCCGAA GGTCGACATG ACTTTTGCGC GTGGCTTGCG TGCTATTCTG
CGTCAGGACC CTGACGTGGT GATGGTCGGT GAGATCCGTG ACTTAGAAAC CGCACAAATT
GCAGTGCAAG CGTCCTTAAC GGGTCACTTA GTAATGTCGA CCCTTCACAC CAACACCGCT
GTTGGTGCGA TCACGCGTCT ACGCGATATG GGCATTGAAC CATTCCTTAT TTCTTCATCG
TTATTGGGTG TGTTAGCACA GCGCTTGGTT CGTACGCTTT GCCCAAGTTG TAAAGAACCG
TATGAAGCCG ATGCTGAACA GAAGAAACTG TTTGGTATGG AAGCACATGA ACCACTAGAG
CTACACCGTG CTAAAGGCTG TGAAGCGTGT AACCAAAAAG GCTACCGAGG TCGAACAGGT
ATCCACGAGC TCATTATGGT CGATGAGCAA GTGCAAGAAT TGATTCACCG AGAGTCTGGT
GAGCAAGAAA TTGAGAGAGC TGTTCGCGCT CATACGCCAA GTATTCGCAG TGATGGTCTA
AGCAAAGTAC GTCGTGGTAT TACGTCACTT GAAGAAGTGA TGCGAGTGAC GAAGGAAACC
TAA
|
|---|
| Protein sequence | MVDMLDTAPS MRRLPFSFAN RFKLVLETEH PERPPILYYV EPLNPAALVE VRRVLKKSFV
PQPIDKEAFD KKLTEAYQRD SSEARQLMED IGADSDDFFS LAEELPHDED LLESEDDAPI
IKLINAMLGE AIKEGASDIH IETFEKTLSI RFRVDGVLRE VLTPSRKLAP LLVSRVKVMA
KLDIAEKRVP QDGRISLRIG GRAVDVRVST MPSSHGERVV MRLLDKNATR LDLHSLGMTP
SVHDNFRHLI QRPHGIILVT GPTGSGKSTT LYAGLQEINS NERNILTVED PIEFDIDGIG
QTQVNPKVDM TFARGLRAIL RQDPDVVMVG EIRDLETAQI AVQASLTGHL VMSTLHTNTA
VGAITRLRDM GIEPFLISSS LLGVLAQRLV RTLCPSCKEP YEADAEQKKL FGMEAHEPLE
LHRAKGCEAC NQKGYRGRTG IHELIMVDEQ VQELIHRESG EQEIERAVRA HTPSIRSDGL
SKVRRGITSL EEVMRVTKET
|
|---|
| |