| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001717 |
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| Symbol | |
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| ID | 8555346 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013456 |
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| Strand | - |
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| Start bp | 116429 |
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| End bp | 117421 |
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| Gene Length | 993 bp |
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| Protein Length | 330 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 646404710 |
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| Product | DNA-directed RNA polymerase alpha subunit |
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| Protein accession | YP_003284345 |
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| Protein GI | 262392491 |
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| COG category | [K] Transcription |
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| COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
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| TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000199534 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAGGGTT CTGTAACAGA ATTTCTTAAG CCACGTCTAG TTGACATCGA ACAAATCAGC
TCGACTCACG CAAAAGTAAC TCTTGAGCCA TTAGAGCGTG GCTTTGGTCA TACTCTGGGT
AATGCACTTC GCCGCATTCT TCTATCTTCT ATGCCTGGTT GTGCAGTGAC AGAAGTAGAA
ATCGAAGGCG TACTTCACGA GTACAGCACT AAAGAAGGTG TACAAGAAGA TATTCTTGAA
ATCCTTCTAA ACCTTAAAGG TTTGGCAGTG CGTGTTGCTG AAGGCAAAGA TGAAGTGTTC
ATTACTTTGA ACAAATCAGG CTCGGGCCCT GTGGTTGCAG GTGACATCAC CCATGATGGT
GATGTAGAGA TCGCTAACCC TGAACACGTT ATTTGTCACC TAACGGATGA CAACGCTGAA
ATCGCAATGC GTATTAAAGT AGAACGTGGT CGTGGTTATG TTCCAGCTTC TGCGCGTATC
CATAACGAAG AAGACGAGCG TCCAATCGGT CGCCTACTAG TAGATGCTAC TTACAGCCCA
GTAGACAAAA TTGCCTACGC TGTAGAAGCA GCTCGTGTAG AACAGCGCAC TGATCTAGAC
AAGCTTGTTA TCGATATGGA AACAAACGGT ACTCTAGAAC CTGAGGAAGC AATCCGTCGT
GCAGCTACAA TCCTAGCTGA ACAATTGGAT GCATTCGTAG ATCTTCGTGA TGTACGAGTT
CCTGAGGAGA AAGAAGAGAA GCCAGAATTC GATCCGATCC TACTGCGTCC TGTAGACGAT
CTTGAACTAA CAGTTCGCTC TGCTAACTGT CTGAAAGCAG AAGCGATTCA CTACATCGGT
GATCTAGTAC AACGTACTGA GGTTGAGCTA CTTAAAACGC CTAACCTTGG TAAAAAATCT
CTTACTGAGA TTAAAGACGT ACTTGCGTCA CGTGGTCTGT CTCTGGGCAT GCGCCTAGAA
AACTGGCCAC CTGCATCAAT CGCTGAAGAT TAA
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| Protein sequence | MQGSVTEFLK PRLVDIEQIS STHAKVTLEP LERGFGHTLG NALRRILLSS MPGCAVTEVE
IEGVLHEYST KEGVQEDILE ILLNLKGLAV RVAEGKDEVF ITLNKSGSGP VVAGDITHDG
DVEIANPEHV ICHLTDDNAE IAMRIKVERG RGYVPASARI HNEEDERPIG RLLVDATYSP
VDKIAYAVEA ARVEQRTDLD KLVIDMETNG TLEPEEAIRR AATILAEQLD AFVDLRDVRV
PEEKEEKPEF DPILLRPVDD LELTVRSANC LKAEAIHYIG DLVQRTEVEL LKTPNLGKKS
LTEIKDVLAS RGLSLGMRLE NWPPASIAED
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