| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_001530 |
|---|
| Symbol | |
|---|
| ID | 8559843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | + |
|---|
| Start bp | 1730178 |
|---|
| End bp | 1731347 |
|---|
| Gene Length | 1170 bp |
|---|
| Protein Length | 389 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 646409200 |
|---|
| Product | L-proline Glycine Betaine ABC transport ATP-binding protein proV |
|---|
| Protein accession | YP_003288678 |
|---|
| Protein GI | 262396825 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1125] ABC-type proline/glycine betaine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAAA TTGACAAGCT AACCAAAATT TTTGAAACGC CTAATGGCCC GGTGACTGCC
GCAGATCACA TTGAGATGGA AGTTCCCAGT GGTGAAATAT GTGTGTTACT TGGCCCATCC
GGTTGTGGCA AAACCACCAC GCTGAAAATG GTCAACCGAA TTATTCCCGC GACATCGGGC
AAGATCTACC TTGGTGGTGA AGATACTTCT GGGATGGATA CGGTCACTCT GCGCCGCAAC
ATTGGCTATG TTATTCAGCA AATTGGCTTA TTTCCCAACA TGACGATCGG CGAAAACATC
GCGGTGGTTC CCAAGTTATT AGGATGGGAT AAGGCAAGGT ACATGACGCG TGCAAAAGAG
CTATTGGAGA TGGTGGCTCT TGATCCTAGT GTCTTCCTTA ATCGTTATCC AAATGAGTTG
TCTGGCGGAC AGCAGCAACG AATTGGTGTT GCCCGAGCGC TAGCTGCGGA TCCTCCCGTT
ATGCTGATGG ATGAACCTTT TGGCGCGATT GACCCGATCA ACCGTGAAGT AATCCAGGAT
GAGTTCCTTA AAATGCAGCA AGAGCTCAAT AAGACCATCA TGTTTGTCAG TCATGACATT
GATGAAGCGG TCAAAATGGC CGATAGAATC GCGATTTTCC GTGATGGTCA CCTGGTTCAG
TACGATACGC CTGACGATTT GCTCGCACAC CCGAAAGATG GTTTCGTGAA AAACTTTGTC
GGAGATGATC GCGCACTTAA ACGTCTTCGC TTAGTGACGG CTGAATCCGT CATGCAGACC
ACTTTTGCGT ACGTGAAACC TAACGATACG CTTGCCGACG CTCTAACCAA AATTGACGCG
TATGGGTATC GCGACGCCGT GATATTAGTG AATGACCAAC ACCAACCTAT CGGTTATGTG
CCAAAAGCTA CCGCAATCAA TATGAAGGGG TACTGCGGTG AACATTATGT CGGCCTGAAA
ACAATCGCCC GAACCACGGA TGATCTGCGT AAAGTCGCGT CGAAGATGTT CACGCACGAC
ATTGTTTGGA TGCCGTGTGT TGACGAGAAT GGCCGCTTAG TGGGCGAAGT CACACAGCGC
GGCATTACCC ATTATCTCGG TGCAACTTAT CAGCGCGATA CCTCTCCTAG CCAGCCACAG
CCATTGCATC AGGCTAAGGA GGCATCGTGA
|
|---|
| Protein sequence | MIKIDKLTKI FETPNGPVTA ADHIEMEVPS GEICVLLGPS GCGKTTTLKM VNRIIPATSG
KIYLGGEDTS GMDTVTLRRN IGYVIQQIGL FPNMTIGENI AVVPKLLGWD KARYMTRAKE
LLEMVALDPS VFLNRYPNEL SGGQQQRIGV ARALAADPPV MLMDEPFGAI DPINREVIQD
EFLKMQQELN KTIMFVSHDI DEAVKMADRI AIFRDGHLVQ YDTPDDLLAH PKDGFVKNFV
GDDRALKRLR LVTAESVMQT TFAYVKPNDT LADALTKIDA YGYRDAVILV NDQHQPIGYV
PKATAINMKG YCGEHYVGLK TIARTTDDLR KVASKMFTHD IVWMPCVDEN GRLVGEVTQR
GITHYLGATY QRDTSPSQPQ PLHQAKEAS
|
|---|
| |