| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000503 |
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| Symbol | |
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| ID | 8558808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio sp. Ex25 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_013457 |
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| Strand | - |
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| Start bp | 602681 |
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| End bp | 605599 |
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| Gene Length | 2919 bp |
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| Protein Length | 972 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 646408167 |
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| Product | inner membrane efflux transporter of RND family multidrug efflux pump |
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| Protein accession | YP_003287654 |
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| Protein GI | 262395801 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTTCAA AGAGCGCGAA CGATGGCTCA TACAGCCTAA ATGTCACGTT CGATGTCGGG
ACCGATCCAG ACATGGCGCA AGTAAACGTG CAAAACCGTG TGTCACAGAT CGAGTCAAAA
CTGCCTCAAG AAGTGCGCAT GGTTGGTGTG ACGGTGAAAA AACGCTCACC TGACTTGCTG
ATGGTGCTTA ACTTCTATTC GCCTGATGGC AAATACGACG ATCAGTTCTT GATTAACTAC
ATTAACTTGA ATGTAAAAGA TCAGCTCGCT CGTGCGAAAG GCATTAGTGA AGTTAACGTG
ATTGGTGGTG GCGAATACGC AATGCGTGTT TGGTTAGATC CGGAAAAAAT GGCCAACCTT
AAGCTAACCA CGTCAGACGT ATACGCCGCT TTGGCTGAAC AAAACGTTCA AGTTGCGGCA
GGGCGTGTTG GTGCAGCACC ATACAACAAT CCGCAAGAAG TTCAGTTTAA CCTTGTGACC
AAAGGTCGCT TGGAAAGCGT GAGCGAGTTT GAGAACGTTG TCCTTCGAGC TAATCCAAAT
GGTTCCACGG TTTATCTGAA AGATGTCGCT CGTGTCGAAC TAGGTAAAAA GTTCTACGAT
GGTAACGGTA AATTCCGTGG TCAGGACGCG TCAATTGTTG CATTGTCTCT TCAATCGGAT
GCGAACGCGT TAGAAAGTGG TCAGGCCGTC ATGGAGCTGC TTGAGGACTT GAGTAAAAAC
TTCCCTGAGG GCATGGCGTA TGAGACCAGC TACGATACAA CCGTGTTTGT ATCTGAATCG
ATCAAAGGGG TAGTCAAAAC ACTGATTGAA GCGATTCTAT TGGTGATTGC TGTAACTTAC
TTGTTTTTGG GTAGCGCGCG CGCAACGTTG ATTCCTGTTG TTGCGATCCC CGTTTCTCTG
ATTGGTACGT TTGCCATCAT GCAGGCGACG GGCTTCACCA TCAATACGGT CACTTTGTTT
GGCTTGATCC TCGCGATTGG TATCGTGGTG GACGATGCGA TTCTGGTTAT CGAAAACGTC
GATACCACCA TGGCGAAAGA CCCAACCATT TCACCGCGTA AAGCGACATT GCTAGCGATG
AAAGAAGTAA CGGGCCCAAT CATCACGTCG ACCTTGGTTC TACTTGCGGT ATTCATACCA
GTCGCGATGC TGCCGGGTAT CACTGGAATC ATGTATCGCC AGTTCGCTTT GACCATCTGT
ATTTCGGTTG TGATCTCATC CATTAACGCA TTGACGCTGT CTCCAGCACT TTGTTCTTTG
GTATTGAAGC AGGGTGGGGG CAACACGGCT AACTGGTTCC AGGCTTTCAA CCGAGGCTTA
GAGCGTATCA CAACGCGTTA TGGTCAGGTC GCTGGTTTCT TGGTGAAGAA ATCTTTGCTA
CTCGTGACGT TCTTTATAGT CGCTATCGCG GCGGTCACTT TCTTTGCGAA AACCACCTCA
ACAGCGTTTG TTCCTCAAGA AGATAAAGGC ATTTTGCTGG TTAACGTTCA GCTGCCAGAT
TCAGCTTCTT TATCTCGTAC TGAAGAAGTC ACCAATGATT TAATGAACAT GATTGGTGAA
GAACCTGGTG TGGATGGCGT GACGGTTGCA AACGGTTACT CGTTTATGAC AGGCGCAGCA
GCATCAAACG GTGCATCTGT GTTTATCAAA CTGCATGACT GGGATACTCG TAACTCGTTG
CAAGGGGAAC ACTCTGCCAA TGCCATCGCG GCGCGTATTA ATGGCCGAGC GGCGACAGAG
TTGCCTCAAG CGGTTGTGTT TGCGATGGGA CCTCCGGCGG TTCCTGGTAT GGGCGCTGCG
TCTGGTTTTG AGTTTGTGCT TGAAGATACG CTAGGGCGAA GCCGTACCGA TTTGTCGATG
GTCATGGGAG AAATGATCCA AGCGGCTAAC CAAGCCCCTG AAATTGCCTA CACGTTTAGC
ACGTTCCGCG CGAATGTCCC TCACTACTAC GTTGATATCG ACCGTGAGAA AGCACAGCAG
TTGGGTATTT CGCTATCGTC TATTTTCCAA ACCTTGCAAG GCAACTTAGG TTCGCTTTAT
GTGAATGACT TCACCATATT TGGTAAGAAC TTCCGCGTAA CCATGCAAGC TGATAGCCAG
CACCGTAGCA GCATGGAAGA TCTAGAGCGT TTCCATGTTC GTTCTTCGAA CGGTGATATG
GTTCCGCTAA GTACGCTAGT GAGCTACGAG CAAGTGTTTG AGCCTGATGT GGCATGGCGT
TACAACATGT ACCGCAGTGC TATCATTCAA GGCCAACCAG CTCCGGGCTA CTCTAGTGGT
GATGCGATTG CCGCAATGGA ACGCGTTGCT GCAGAGGTCC TTCCGCAGGG CTACACGTAC
GAATGGACAG GTATGGCCTA CCAGGAAGTA CTTGCGGGTA ACCAAGCCAT TTATGCGTTT
GCACTGGCTT TGATCTTCAT TTACTTGTTC ATGGTGGCAC AATATGAGAG CTGGAGTATT
CCATTAGCCA TCATTTTGGT GGTGCCAGTA GCAACGTTAG GCTCCTTCTT GGCGTTGAAT
CTGACTGGGA CACCGCTTAA CTTGTATGCG CAAATTGGCC TTGTCTTGCT CATAGCCTTG
GCGGCGAAAA ACGCAATTTT GATTGTGGAG TTCGCCAAGC AAGAACGTGA AGAAAAAGAT
GCTGATATCG ATAGTGCAGC GGTTAAAGGA GGCACGTTAC GTTTCCGCGC TGTGAATATG
ACATCTTGGT CGTTTATCCT GGGTATCTTC CCGCTGATCT TCGCCGCAGG TGCAGGGCAC
GTGAGCCAAA ACTCGCTCGG CGTGTCGCTG ATTGGTGGTC TATTGTGTGT GCTTCTAGCA
GGTACATTCT TGATCCCAGG CTTCTACGCT CTGGTGCAAA GACAGCGAGA GAAAGTTCAT
GGCGGCAACA CCAAGCTGGT TCCTCTTGAT GATGAGTAA
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| Protein sequence | MSSKSANDGS YSLNVTFDVG TDPDMAQVNV QNRVSQIESK LPQEVRMVGV TVKKRSPDLL
MVLNFYSPDG KYDDQFLINY INLNVKDQLA RAKGISEVNV IGGGEYAMRV WLDPEKMANL
KLTTSDVYAA LAEQNVQVAA GRVGAAPYNN PQEVQFNLVT KGRLESVSEF ENVVLRANPN
GSTVYLKDVA RVELGKKFYD GNGKFRGQDA SIVALSLQSD ANALESGQAV MELLEDLSKN
FPEGMAYETS YDTTVFVSES IKGVVKTLIE AILLVIAVTY LFLGSARATL IPVVAIPVSL
IGTFAIMQAT GFTINTVTLF GLILAIGIVV DDAILVIENV DTTMAKDPTI SPRKATLLAM
KEVTGPIITS TLVLLAVFIP VAMLPGITGI MYRQFALTIC ISVVISSINA LTLSPALCSL
VLKQGGGNTA NWFQAFNRGL ERITTRYGQV AGFLVKKSLL LVTFFIVAIA AVTFFAKTTS
TAFVPQEDKG ILLVNVQLPD SASLSRTEEV TNDLMNMIGE EPGVDGVTVA NGYSFMTGAA
ASNGASVFIK LHDWDTRNSL QGEHSANAIA ARINGRAATE LPQAVVFAMG PPAVPGMGAA
SGFEFVLEDT LGRSRTDLSM VMGEMIQAAN QAPEIAYTFS TFRANVPHYY VDIDREKAQQ
LGISLSSIFQ TLQGNLGSLY VNDFTIFGKN FRVTMQADSQ HRSSMEDLER FHVRSSNGDM
VPLSTLVSYE QVFEPDVAWR YNMYRSAIIQ GQPAPGYSSG DAIAAMERVA AEVLPQGYTY
EWTGMAYQEV LAGNQAIYAF ALALIFIYLF MVAQYESWSI PLAIILVVPV ATLGSFLALN
LTGTPLNLYA QIGLVLLIAL AAKNAILIVE FAKQEREEKD ADIDSAAVKG GTLRFRAVNM
TSWSFILGIF PLIFAAGAGH VSQNSLGVSL IGGLLCVLLA GTFLIPGFYA LVQRQREKVH
GGNTKLVPLD DE
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