| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VEA_000065 |
|---|
| Symbol | |
|---|
| ID | 8558370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio sp. Ex25 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_013457 |
|---|
| Strand | - |
|---|
| Start bp | 77035 |
|---|
| End bp | 77997 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 646407730 |
|---|
| Product | diguanylate cyclase/phosphodiesterase domain 2 |
|---|
| Protein accession | YP_003287218 |
|---|
| Protein GI | 262395365 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.175883 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAAAA TGGAAGAATA TCTAACTCGA ATTGCCTGCT TAGAAAAAGA AAATGAAGAG
CTGAAGCGGA AGAATGCGCG ACTACAAGAA AAGTTGAATG CTGCACTCGA CAGTAATGGA
CTGTGTTTGT GGGAGCAGCA TATTCCTTCA GGTACTTTGA CGATATTCAA TATGCAGTGG
GGCAAAATGC TAGGTTATCA GCCCCATGAG TTAACCGCGA CGGTTGAAAC GTGGAAAAAC
AATCTCCACC CTGAAGATTA TGATCTTGCG GTGGGTGCAT TTGAAGATCA CCTAGCTGGC
AAAACCGACC TTTATGAGGT AGTTCATCGC ATGATTCATA AAGACGGCAG TGATAGTTGG
GTCTACGATC GAGGGCGCGT CGTCGAGTAT GGTTCTGATG GCGAACCACT ACGCATGATG
GGCACTCATA TCGATATTAC AAAAGAAAAG CGATATGAGC AGCAACTGGC TAAGTTAGCT
TCGAGTGATC CATTGACCGG ACTGTTAAAT AGAAAAGCAA TTGAGGAAAA CTTTAATCAT
CAACCTCAAA CCAAGCCGTC TCAGCAGTCT GCCTTAGTGT TTGTTGATAT AGATAATTTT
AAAGCAGTTA ACGACCAGCT AGGCCATCAT ACTGGTGATA CTCTCCTCAT TAATATCGCC
AATAGCTTAA CAGAGCTTGC GCCAAGCAAG TCTCAAGTCG GACGCATAGG AGGAGATGAG
TTTGTCGTTT TAAGCTCTTA TTCAAATCAA GAAGAAATAT CTCAACTTTG TGATCGACTC
TTAAGTTCCA TCATTCCTGC GATAAATCAG GACTTAAATA AAGTAACGAT TGGAATGAGC
ATCGGTGTTT GTCTATTTGA TAAAGGAAAA CAACAGTTTA ATGAAGTTTA TCAAAAAGCC
GATCATGCAA TGTATGAGAT AAAGAAAAAT GGCAAAAATG GCGTTGCCTA TATCCAGATA
TAA
|
|---|
| Protein sequence | MRKMEEYLTR IACLEKENEE LKRKNARLQE KLNAALDSNG LCLWEQHIPS GTLTIFNMQW
GKMLGYQPHE LTATVETWKN NLHPEDYDLA VGAFEDHLAG KTDLYEVVHR MIHKDGSDSW
VYDRGRVVEY GSDGEPLRMM GTHIDITKEK RYEQQLAKLA SSDPLTGLLN RKAIEENFNH
QPQTKPSQQS ALVFVDIDNF KAVNDQLGHH TGDTLLINIA NSLTELAPSK SQVGRIGGDE
FVVLSSYSNQ EEISQLCDRL LSSIIPAINQ DLNKVTIGMS IGVCLFDKGK QQFNEVYQKA
DHAMYEIKKN GKNGVAYIQI
|
|---|
| |