Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VEA_000023 |
Symbol | |
ID | 8558321 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio sp. Ex25 |
Kingdom | Bacteria |
Replicon accession | NC_013457 |
Strand | + |
Start bp | 23221 |
End bp | 24015 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 646407681 |
Product | protein of avirulence locus ImpE |
Protein accession | YP_003287175 |
Protein GI | 262395322 |
COG category | [R] General function prediction only |
COG ID | [COG4455] Protein of avirulence locus involved in temperature-dependent protein secretion |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.692484 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCAAT GGAAAAATGC TTTGTCCCAA GGCCAATTGC AACAAGCTCT AAAGCTATTA ATTGATGAAA TTAAAGCGGC GCCTAAAGAT GCAAGCTTGA GAAGCTCGTT CATTGAGCTG CTTTGCATTG ATGGAGACTT CGAGCGTGCG GATGAGCAAC TTATGCAATC GATCAAATTG TTTCCTGAGT ATCTACCTGG TGCAAGTCAG TTGCGACATT TAGTGAAAGC GGCCCAGGCT AGAAAAGATT TTATCGACGG TGCGGCTAGT GCCAAGGTAT TAGGTGACGA GGAATTCACT AAAGAGCTTG TTCGCTTTAA CCTCGCTCTC AAAAATCAAG ACTATGCAGA AGCGTCACAC CTAGCGCATA GCATTGAAGA GCATCGCACT ATTAAAGGCT TTAACATAAA CGGTACAAAT TATGAAGATG CTAGGGATAT TGATGATCGT TTAGGTGGTT ACATTGAACT GTTTTCCACC GCGGGTAACT ATTTTCTTGT TCCAATTTCT AGCATTCAAG CGCTAGAAAT AAAAGCACCT ACCTCTTTAT TAGAAAGTAT TTGGCGACCT GTAGAGTTTG ATATTGACGG ACTTGGCGAA GGAGAAGGCC ATATGCCATT GACCTATGTT GACTCAGAAA CTGACGCACA AAAGCTAGGT CGAGAAACAG ATTGGAAACA GCTTGGTGAG CAAGAATCCT TCGTGGGTTT AGGCCAAAAA TGTTGGCTAG TTGGTGATTC AGCCCTCCCA ATCTGTGACT TGACTACATT GTTAGAATCG AAACAAATAG CGTAA
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Protein sequence | MTQWKNALSQ GQLQQALKLL IDEIKAAPKD ASLRSSFIEL LCIDGDFERA DEQLMQSIKL FPEYLPGASQ LRHLVKAAQA RKDFIDGAAS AKVLGDEEFT KELVRFNLAL KNQDYAEASH LAHSIEEHRT IKGFNINGTN YEDARDIDDR LGGYIELFST AGNYFLVPIS SIQALEIKAP TSLLESIWRP VEFDIDGLGE GEGHMPLTYV DSETDAQKLG RETDWKQLGE QESFVGLGQK CWLVGDSALP ICDLTTLLES KQIA
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