| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2861 |
|---|
| Symbol | ksgA |
|---|
| ID | 5136777 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | - |
|---|
| Start bp | 3013793 |
|---|
| End bp | 3014608 |
|---|
| Gene Length | 816 bp |
|---|
| Protein Length | 271 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 640534305 |
|---|
| Product | dimethyladenosine transferase |
|---|
| Protein accession | YP_001218711 |
|---|
| Protein GI | 147673129 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0030] Dimethyladenosine transferase (rRNA methylation) |
|---|
| TIGRFAM ID | [TIGR00755] dimethyladenosine transferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.00548999 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAATG ATGTCCACTT AGGGCACAAA GCGCGTAAAC GCTTTGGTCA GAACTTCCTC
AATGATCCTT ACATCATTGA TGGTATTGTG TCGGCAATTA ATCCCAAACC GGGGCAAAAC
TTGGTTGAAA TCGGCCCAGG GTTAGGCGCC ATCACAGAAC CGGTAGGACG TGAAGTGGAT
AAGTTCACTG TCATTGAGCT TGACCGCGAT CTGGCAGAAC GCCTGCGTAA TCATCCAGAA
TTAGCCAGCA AGTTGACCAT TCATGAAGGC GATGCGATGC GTTTCGACTT CAAGCAGTTG
GTGAAACCCA ATAACAAACT TCGCGTGTTT GGTAACTTAC CTTACAACAT TTCAACGCCG
CTGATGTTCC ACTTGTTTGA ATTCCACCGT GATATTCAAG ACATGCACTT CATGCTGCAA
AAAGAGGTGG TGAACCGATT AGCCGCAGGT CCGGGAACCA AGGCCTACGG TCGACTAACC
GTGATGGCGC AATACTACTG TAAAGTGGTT CCGGTACTAG AAGTGCCACC TAGCGCATTT
GTGCCACCAC CAAAAGTGGA TTCGGCCGTG GTACGTTTGG TGCCTTATGA AGATCTCCCT
CATCCAGCAA CCAGCTTAGA GTGGTTAGAT CGCGTGGTAC GTGAAGGCTT TAACCAACGC
CGTAAAACGG TGCGTAACTG TTATAAAGGT TTGGCTGAAC CGGAAACACT GGAAACTCTG
GGCATCAACC CAGGTATGCG CCCAGAAAAT CTGACCTTGG CTCAATTTGT GGCATTAGCG
AACTGGCTTG ATGCCACACA CAAAACTCAC GCATAA
|
|---|
| Protein sequence | MRNDVHLGHK ARKRFGQNFL NDPYIIDGIV SAINPKPGQN LVEIGPGLGA ITEPVGREVD
KFTVIELDRD LAERLRNHPE LASKLTIHEG DAMRFDFKQL VKPNNKLRVF GNLPYNISTP
LMFHLFEFHR DIQDMHFMLQ KEVVNRLAAG PGTKAYGRLT VMAQYYCKVV PVLEVPPSAF
VPPPKVDSAV VRLVPYEDLP HPATSLEWLD RVVREGFNQR RKTVRNCYKG LAEPETLETL
GINPGMRPEN LTLAQFVALA NWLDATHKTH A
|
|---|
| |