| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2823 |
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| Symbol | mshE |
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| ID | 5137190 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2973460 |
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| End bp | 2975187 |
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| Gene Length | 1728 bp |
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| Protein Length | 575 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640534267 |
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| Product | MSHA biogenesis protein MshE |
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| Protein accession | YP_001218673 |
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| Protein GI | 147673996 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 41 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCAATTA ATAAACTGCG TAAACGGCTT GGTGACTTGC TGGTTGAAGA GGGGATTGTG
AGCGAAGCGC AGCTTGAACA AGCGCTCAAT GCCCAGAAAA ATACCGGACG CCGCTTAGGG
GATACCTTAA TTTCGCTTGG CTTTTTAAGC GAAACCCAGT TGCTGAACTT TTTGGCGCAG
CAATTGAGTT TGCCAGTGAT CGATCTGAGC CGTGCCCATG TCGATATTGA TGCTGTTCCT
TTACTGCCTG AAGTTCATGC CCGCCGTTTG CGTGCGCTGG TGATAGGCCG CAGTGGTGAT
ACGCTGCGCA TAGCCATGAG TGATCCTGCG GATTTGTTTG CTCAAGAAGC CTTGCTCAAC
CAGTTGCCTG ATTATGGTTT TGAGTTTGTC ATCGCCCCTG AGAAGCAGTT GGTCGATGGC
TTTGATCGTT ACTATCGCCG CACCAAAGAA ATTGTCTCGT TTGCCGAGCA ATTGCATGCC
GAACACAAAA CCAATGATAG TTTTGATTTT GAGATCACCG ATTCAGATAG CGATGAAGTG
ACGGTTGTTA AACTGATCAA CTCGCTGTTT GAAGATGCGA TTCAAGTGGG AGCCTCGGAT
ATACATATTG AGCCGGATGC CAACGTACTG CGTTTGCGCC AACGGATCGA TGGGGTATTG
CATGAAACCT TGCTCCATGA AGTGAATATC GCCTCAGCCT TAGTGCTGCG CTTAAAATTA
ATGGCGAATC TGGATATTTC AGAAAAACGC CTTCCGCAAG ATGGCCGCTT TAACATCCGT
GTAAAAGGAC AATCCGTCGA TATCCGGATG TCAACCATGC CTATCCAGCA CGGTGAATCG
GTGGTGATGC GTTTGCTCAA CCAATCTGCA GGGGTTAGAA AGCTCGAAGA GTCAGGTATT
CCGCCTCATT TATTGCTGCG TTTGCGCCAT CAGTTGAAAC GCCCTCATGG CATGATTCTG
GTGACTGGGC CTACCGGCTC GGGGAAAACC ACCACCTTGT ATGGCGCACT CAACGAGCTC
AATACGTCCG GCAAAAAAAT CATTACTGCG GAAGATCCGG TGGAATACCG GATTTCACGG
ATCAATCAGG TGCAAGTGAA CCCGAAAATC AATCTCGATT TCTCGACGTT ACTGCGCACT
TTCTTGCGCC AAGACCCAGA TATTATTTTG GTCGGTGAGA TGCGTGACCA AGAGACGGTC
GAAATTGGCC TGCGCGCTGC ATTAACCGGT CACTTAGTCT TAAGTACTCT GCACACCAAT
GATGCCGTCG ATAGCGCGCT GCGTTTGATT GATATGGGGG CGCCCGGTTA TCTGGTTGCC
AGTGCGGTAC GTGCCGTGGT TGCGCAGCGT TTAGTGCGAA AAGTCTGTCC AGATTGTAGT
GGACATGATG AGGTGGATGA AGCGCGTCGC CAATGGCTTG TGACGCGTTT CCCTAATCAA
GCTGCCGCCA AATTCACTCG TGGACGCGGC TGCCAGAACT GTAACTTAAC CGGTTATCGC
GGCCGGATCG GTGTATTTGA AATGCTTGAG CTGGATCAGC CGATGATGGA TTGCTTGCGG
GCAAATGATG CTGTGGCCTT CTCTAAAGCC GCACGCAGTA ACACAGATTA TAAACCGCTA
CTGGCTTCGG CGATGGAGTT AGCGCTACAA GGCATCGTCA GTCTTGATGA AGTGATGTCG
CTGGGTGAAG GTGATTCCTC TGGTTTGGTT GAACCGATTT ATCTGTAG
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| Protein sequence | MPINKLRKRL GDLLVEEGIV SEAQLEQALN AQKNTGRRLG DTLISLGFLS ETQLLNFLAQ
QLSLPVIDLS RAHVDIDAVP LLPEVHARRL RALVIGRSGD TLRIAMSDPA DLFAQEALLN
QLPDYGFEFV IAPEKQLVDG FDRYYRRTKE IVSFAEQLHA EHKTNDSFDF EITDSDSDEV
TVVKLINSLF EDAIQVGASD IHIEPDANVL RLRQRIDGVL HETLLHEVNI ASALVLRLKL
MANLDISEKR LPQDGRFNIR VKGQSVDIRM STMPIQHGES VVMRLLNQSA GVRKLEESGI
PPHLLLRLRH QLKRPHGMIL VTGPTGSGKT TTLYGALNEL NTSGKKIITA EDPVEYRISR
INQVQVNPKI NLDFSTLLRT FLRQDPDIIL VGEMRDQETV EIGLRAALTG HLVLSTLHTN
DAVDSALRLI DMGAPGYLVA SAVRAVVAQR LVRKVCPDCS GHDEVDEARR QWLVTRFPNQ
AAAKFTRGRG CQNCNLTGYR GRIGVFEMLE LDQPMMDCLR ANDAVAFSKA ARSNTDYKPL
LASAMELALQ GIVSLDEVMS LGEGDSSGLV EPIYL
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