| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2657 |
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| Symbol | cadB |
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| ID | 5135286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | + |
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| Start bp | 2810790 |
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| End bp | 2812127 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 640534105 |
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| Product | lysine/cadaverine antiporter |
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| Protein accession | YP_001218535 |
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| Protein GI | 147673579 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0531] Amino acid transporters |
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| TIGRFAM ID | [TIGR00905] transporter, basic amino acid/polyamine antiporter (APA) family |
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Plasmid Coverage information |
| Num covering plasmid clones | 38 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCAA ATGCAAAAAA AATCGGCCTG ATCGCCTGTA CGGGTGTGGT GGCTGGCAAC
ATGATGGGCA GTGGTATTGC GCTGCTTCCT TCTACGCTAG CGAGCGTAGG TTCAATTTCC
ATTTATAGCT GGCTGATCTG CATTGTTGGC GCACTCAGTT TGGCGTTTGT GTTTGCTCGT
TTGGCAACCA AAAACCCGCA AGAGGGTGGC CCGATTGCTT ATGCAGGGGA AGTGTCACCG
GTGTTTGGTT TCCAAACGGG CGTGCTTTAC TACCACGCTA ACTGGATTGG TAATTTGGCG
ATTGCGATTA CCGGAGTTTC TTACCTTTCG GTGTTCTTCC CAGTGCTGAA TAACCCGATC
CCTGCTGGTT TAGCGACCAT TGCTTCGGTT TGGCTATTTA CCTTAGTCAA CTTGCTTGGT
GGTAGCTGGG TAAGCCGTTT ATGTACCATT GGTTTGGTGC TGATTTTGAT CCCTGTAGTC
GGTACGGCTC TGTTTGGTTG GACGCACTTT GACAGCGCGC TCTACAGCCA AAACTGGAAC
GTGTCTGCCG GTAGCGATGG CCATGCGGTG ATCACCGCAG TGCTGATTTG TCTGTGGTCT
TTCGTGGGTG TCGAATCGGC GGCGGTTTCT TCCGGTATGG TCGAAAACCC AAAACGCACG
GTGCCACTGG CAACCATGTT AGGTACTGGT CTTGCGGGCC TTATCTATGT GCTATCAACT
CAAATGATCA GCGGCATGTT CCCTGCGTCT GAAGTGGCGG CATCCGGTGC ACCTTTTGCA
CTGGCGACCA CGGCACTGTT TGGTAGCTGG ACTGCGCCAT TCGTGTCTGC CTTTACTGCA
CTAGCGTGTT TCACGTCACT TGGCTCTTGG ATGATGCTGG TCGGCGAAGC GGGCAAACGT
GCCGCTAACG ATGGTAACTT CCCGAAAGTG TTCGGTGAAA CCGATCGCAA CGGTGTGCCG
AAAAAAGGTC TGCTGATTGC TTCCAGCATG ATGACACTGC TGATGCTGGT ACTGATGTTC
TTCAGCTCAG AAACTGCACA CGCTTCCGAT CTGTTTAACC AACTGACTAC CGATGCGGTT
CTGCTGACCA TGCTGCCTTA TTTCTACTCC AGCATTAACC TGATCCGCTT CGAAGGCATG
ACCACTCGCA ATACGTTTGT GATGTTGTTC TCCGGTATTG CCAGCCTGTT CTGTATGGTG
GCGCTGGCCG GTGCAGAGGG TTCAACCCTG ACTGCAACCT TCATCATGTC GCTGATTATT
TTGATGTTCT ACAGCAAAAA AGCGGGTCTG GATAAATATC TCGAGACTCA TCCACAACAA
GCTTCGGCTC AGTTCTGA
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| Protein sequence | MSSNAKKIGL IACTGVVAGN MMGSGIALLP STLASVGSIS IYSWLICIVG ALSLAFVFAR
LATKNPQEGG PIAYAGEVSP VFGFQTGVLY YHANWIGNLA IAITGVSYLS VFFPVLNNPI
PAGLATIASV WLFTLVNLLG GSWVSRLCTI GLVLILIPVV GTALFGWTHF DSALYSQNWN
VSAGSDGHAV ITAVLICLWS FVGVESAAVS SGMVENPKRT VPLATMLGTG LAGLIYVLST
QMISGMFPAS EVAASGAPFA LATTALFGSW TAPFVSAFTA LACFTSLGSW MMLVGEAGKR
AANDGNFPKV FGETDRNGVP KKGLLIASSM MTLLMLVLMF FSSETAHASD LFNQLTTDAV
LLTMLPYFYS SINLIRFEGM TTRNTFVMLF SGIASLFCMV ALAGAEGSTL TATFIMSLII
LMFYSKKAGL DKYLETHPQQ ASAQF
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