Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2619 |
Symbol | |
ID | 5137868 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | - |
Start bp | 2769615 |
End bp | 2771387 |
Gene Length | 1773 bp |
Protein Length | 590 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 640534068 |
Product | hypothetical protein |
Protein accession | YP_001218498 |
Protein GI | 147675347 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0438] Glycosyltransferase [COG0726] Predicted xylanase/chitin deacetylase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATATTT TGATGGCCCT ATCCCAACTC GAAGTAACGG GAGCTGAGGT GTATGCCACT AGTGTAGGTA ATGAGCTCAC TCGACGTGGC CATCAGGTAT TTTATGTTTC CGATACGCTC ACCAAAGCTC ACGATGGCCT GTTTTTTAAA CTGCGCTTTA ATAAACGCAG CATCCCGCGG CGCTTTTGGC ATGTCGCCTA TCTGGTTTAC CTGATCAAGA AACATCAGAT CCAGTTAGTC CATGCTCACT CACGAGCATC AAGCTGGAGT TGCCATATTG CCTGCCGCTT GACTAATACC CCTATGGTTA CCACGGTCCA TGGTCGTCAA CCGGTACATG TTTCGCGCAA AAAATTCCAT GCAATGGGAG ATAAAGCGCT TCCGGTTTGT GAAGCGATAC GAGAGCAATT AATCAAAGAT CTCAATGTAC CGGAGAGCCA ACTGCACGTA AGCCGTAATG GGATAGAAAC AAGTATCTTT AAACGCAGCG CAGCACCCAA TAATCCTAAG CCAGTTATCT CTATCATTGG CCGACTCAGT GGCCCTAAAG GTGAACTTTG CTATAGGTTG CTAACCGAGT GTTTAGACCT CGACCGCTAC CAAGTACAAG TGATCACAGG TACACCGTTA ACTGAGCGTT TTAGCGCACT GCAAGATAAA GTCTCATTTC CCGGCTACAG CGCCAACGTT GAACAGATCA TGGCTCAATC AGATTTGGTG ATTGGTGCAG GACGAGTCGC GATGGAGGCA CTCCTATGTG GCCGCCCGAC CCTTGCGATT GGTGAAGCAA GCTGCGTGGG GATTATCGAA CTGGATAATC TAAACCAAGC CATGGCAACC AATTTTGGCG ACATCGGTCC ACACGATCTG GCGATAGATT TCCAGCAAAT CCCCGCTTTG ATTGAGCAAG GCCTAAGTCA ACCGCACTGC ACTCAAGAGA TCACTGAACA GATCAAGCTT AACTATGATT TACAAGTGAT TGTGAATGAG CTTGAAAACC TTTATCAAAC GTTTTATGTC AACAAGTTAC AACGAGAAGT CCCCATCATC ATGTACCACC GCTTTATTCG TGATGACAGC GAAAAAGGTG TACATGGTAC TTATTTGCAT GTTCAGCAGC TTGAGAAACA TTTTCAGTTG CTTAAAAAGA TGGGCTTTGA AACTCTGACC TTCAAAGATC TCTCTGAGAA GGGATTTATT CATCGCTTAC AACCAGGTAA GCGTTTTATC ATAATTACCG TGGATGATGG CTATCGCGAC AACTATGACT TGTTACTGCC ACTGCTCAAA AAGTATCAAT TTAAAGCCGT GGTGTATGTG GTGACTGGCG AGAATTTTAA TCGCTGGGAT GTCGAAGTGA GTGACAACCC TGAAAAAGTG GTCCCTTTGA TGTCACCGGA GCAAGTTAAA GCGTTACATG ACTCTGGATT AGTAGAGATT GGTGGTCATA CGATGACTCA TCCCTTTTTG AGTAAGCTCA GTGAATCGGA ACAACGCGAA GAAATATTGC GCAACAAACT CGAACTTGAA GCGCTAATCG GAGAGCCACT GACCTCCTTT GCTTATCCTT ATGGTGACCA TGATGCAACC TCTAAACAAC TGGCTCAGGA TCTGGGTTAC CCATTTGCCG TAGCGACCAA CAGTGGTCCA CTTTTGATGC ATCAAGATCC CTATCAAATT CGTCGGATTG CGATTTTTCC AAGAACCGAC ACTTTTGGTC TGTGGCGAAA AGTGAAAGGG AATTATCTAT TTAGAAAAAT GAACAAAAAA TAA
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Protein sequence | MNILMALSQL EVTGAEVYAT SVGNELTRRG HQVFYVSDTL TKAHDGLFFK LRFNKRSIPR RFWHVAYLVY LIKKHQIQLV HAHSRASSWS CHIACRLTNT PMVTTVHGRQ PVHVSRKKFH AMGDKALPVC EAIREQLIKD LNVPESQLHV SRNGIETSIF KRSAAPNNPK PVISIIGRLS GPKGELCYRL LTECLDLDRY QVQVITGTPL TERFSALQDK VSFPGYSANV EQIMAQSDLV IGAGRVAMEA LLCGRPTLAI GEASCVGIIE LDNLNQAMAT NFGDIGPHDL AIDFQQIPAL IEQGLSQPHC TQEITEQIKL NYDLQVIVNE LENLYQTFYV NKLQREVPII MYHRFIRDDS EKGVHGTYLH VQQLEKHFQL LKKMGFETLT FKDLSEKGFI HRLQPGKRFI IITVDDGYRD NYDLLLPLLK KYQFKAVVYV VTGENFNRWD VEVSDNPEKV VPLMSPEQVK ALHDSGLVEI GGHTMTHPFL SKLSESEQRE EILRNKLELE ALIGEPLTSF AYPYGDHDAT SKQLAQDLGY PFAVATNSGP LLMHQDPYQI RRIAIFPRTD TFGLWRKVKG NYLFRKMNKK
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