| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2442 |
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| Symbol | |
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| ID | 5137897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2595460 |
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| End bp | 2597766 |
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| Gene Length | 2307 bp |
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| Protein Length | 768 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533894 |
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| Product | sensory box/GGDEF family protein |
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| Protein accession | YP_001218342 |
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| Protein GI | 147674064 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 39 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGAGTCTG ACTTGAGCCG ATTGCGACAC TGGTACAACA AATATGCGCT GCCTCTTGCT
GTTGGGTTGG GCTGCTTTTG GACGGCCAAC CTAGTCGCGC AAGAACCAAC CTTATCGAGC
CAACCGTTAG ACAATCTAGG AACGAGTCGC GTGCCATGGG ACAGCGAGCT TGCAGCAAAC
GCCATGTTGT GGATTGTGGC GCTTGTCGCC ATCATGGTTT TAAGCATCTT AACAGTGCGC
CAGTACCACT ATATTCAACG CTTACGCACC AACCAAAAAT TACTGGAGTC GATCTTTGAT
CAAAGCACAC ACTACATCGG TATCTTTGAC TTAGAAGGTC GGATTATTTC CTGCAATGGC
AAGTTACAGG GACTGCTGTA TCGACATGGT GAAAGTTTGC TAAGACCGAT CTGGCAGCAC
AAAGGTTGGG AGGATTCAGC GGTCGAACAC ATTCAGAACT ATTTCTCTGA GTCAGTGCCG
CAAACTCGCC AGTTTAACGC CGAAATTTGG CATCCTGAGC TTGGAGCCAT CGTGCTGGAG
TGTCAGTTTA AGCCGCTACC GACTCGCGAA GAGTCGCAAA TTCTGCTTGA AGCACAAGAC
ATTACTTGGC GAAAAATTAC CGAAGATAAA CTCTTTCAGC GTGAAGCCAG CCTTCGCCAT
TATTACGATC AGCAGCCAGT GATGATGCTA ACCTTGGATG AGCGTAACCA CATTCAACAA
GTGAATCATT TTGCTGAACA GCTGCTGGGT TATCCCGCCG ATGTCATGCT TGGGCACCAT
ATCCGCGATT TTTATCAAGA TGAAGAGGTA CTGACACCAA GGCAGATGCT ACTGCTACCG
AGCCGCCATG CTTCTTCTGT TTGGCGGCGA GAAGTGTGTT ATCGCCATCA CTCCGGTGAA
ACGGTGTGGG TACGGGAGAA CATTCGTCCG CTGGTCGAAA CGGGCACGCT GTTAATCGTT
GGGGAAGACA TTACCGAAAC CCGCCAGCTT GCCGACCAAC TGGCGTATCA AGCTCGCTAT
GATTTATTGA CCCACACTCT AAACCGAAAC CAGTTTGAGC TAGAACTGGC CAAGGCGCTG
AAAGAAACCG ACAGTCAATT ACGCACCCAC GCCATGCTGT ATCTCGATCT CGATCAGCTT
AAAGTGCTCA ACGATACCGC GGGCCATGAT GCAGGCGATG GCGCGATTCA GTTCTGTGCG
AGCATGCTGG AAGATGTGTT GCCCTTTAAA GCCACCTTGG CGCGTATGGG CGGCGATGAG
TTTTCCGTAT TACTGCGTGA TTGCACCGAG CGTGATGCAG TGTTGGTGGC GCAAAGTATT
ATCCATGCGC TCAGTGAAGT GGCGTTTGTC TGGGAGCATA TTCGCTTTAA TCTGACCTGT
TCGATCGGGA TCCGTATGAT TGACCATACT GCGACATCAC CACAAATGGT GCATGCACAA
GCGGATACGG CGTGCCATGC CGCCAAAGAG GAAGGACGCA ATCGCTTCAA CCTCTATCGA
CAGGATGATG AGGATTTGCG CCGGCGCCAA TTGGAAATGG AGTCGGTGAA TCTAGTGCAC
GATGCGCTCG CCAATGAGCG AATTGAGCTA TTTGCTCAGC GCATTGTGCC GCTCAATCAA
CCCGATGTGT TGCTTCATTT CGAAGTCTTA GTGCGAATTA AAAACGCCGC AGGGGAGTAC
GTTTCACCGG GCATTTTCGT TCCCGCCTCT GAGCGTTATA ATTTGGCGCA CCGTCTGGAT
CGGAAAATTG TCGAGCAGAC CTTTAACTGG TTGGAAGCGC GTCCGCAAGT GTTAGATAAA
CTGGGGCGCG TTTCGATTAA CCTATCGGGT AACTCGATTG GCAATCCAGA TTTTGTGGCC
TTTCTGCTCG AAAGATTGCG CGATAGCCGC ATTCCATGCA GTAAAGTCTG TTTTGAAATC
ACCGAAACGG CTGCGATGCG CAATCTCAAT CAAGCGATCA AAGTGTTATC TCAGCTCAAA
AGCTTAGGTT GCGTGTTGGC TCTGGATGAT TTTGGCTCGG GGCTCTCCTC GTTCGGTTAT
CTGCAGAAAC TGCCGGTCGA TATCGTCAAA ATTGATGGCA TTTTTGTGTG TGATATGGAC
AAAAATGAGA TGGATCGCTT GATGGTCCGC TCTATCCATG AATTGACCAA GCAGATGGGC
AAAAGCACCG TGGCGGAGTT TGTTGAAAAC CAGCAGATAC TTGAGGCTTT GCAGCAGATT
GGTGTGGATT ACGCGCAAGG CTATCTATTC AGCCGCCCAC AACCGATCGC TGATTGGGTT
GCCGAGCAAC TCAAAGAGAA AGCGTAG
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| Protein sequence | MESDLSRLRH WYNKYALPLA VGLGCFWTAN LVAQEPTLSS QPLDNLGTSR VPWDSELAAN
AMLWIVALVA IMVLSILTVR QYHYIQRLRT NQKLLESIFD QSTHYIGIFD LEGRIISCNG
KLQGLLYRHG ESLLRPIWQH KGWEDSAVEH IQNYFSESVP QTRQFNAEIW HPELGAIVLE
CQFKPLPTRE ESQILLEAQD ITWRKITEDK LFQREASLRH YYDQQPVMML TLDERNHIQQ
VNHFAEQLLG YPADVMLGHH IRDFYQDEEV LTPRQMLLLP SRHASSVWRR EVCYRHHSGE
TVWVRENIRP LVETGTLLIV GEDITETRQL ADQLAYQARY DLLTHTLNRN QFELELAKAL
KETDSQLRTH AMLYLDLDQL KVLNDTAGHD AGDGAIQFCA SMLEDVLPFK ATLARMGGDE
FSVLLRDCTE RDAVLVAQSI IHALSEVAFV WEHIRFNLTC SIGIRMIDHT ATSPQMVHAQ
ADTACHAAKE EGRNRFNLYR QDDEDLRRRQ LEMESVNLVH DALANERIEL FAQRIVPLNQ
PDVLLHFEVL VRIKNAAGEY VSPGIFVPAS ERYNLAHRLD RKIVEQTFNW LEARPQVLDK
LGRVSINLSG NSIGNPDFVA FLLERLRDSR IPCSKVCFEI TETAAMRNLN QAIKVLSQLK
SLGCVLALDD FGSGLSSFGY LQKLPVDIVK IDGIFVCDMD KNEMDRLMVR SIHELTKQMG
KSTVAEFVEN QQILEALQQI GVDYAQGYLF SRPQPIADWV AEQLKEKA
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