| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2399 |
|---|
| Symbol | hemD |
|---|
| ID | 5135395 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2554563 |
|---|
| End bp | 2555345 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640533851 |
|---|
| Product | uroporphyrinogen-III synthase |
|---|
| Protein accession | YP_001218299 |
|---|
| Protein GI | 147674713 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 0.659823 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATTGAGA GTGTTATGAC AGTACTGGTC ACTCGTCCTG ATGAACAAGG CGCAGAGCTG
TGCCAGCTGC TGCACCAGCA GGGCATCCCC GCCCTGCACC ATCCGCTACT CGCCATCTCT
GCCAGCCCTC AACTTGCTGC GCTGGCAGAA GATTTATCTT CATTCGATAT CATCATTGCC
GTCAGTCAAC ATGCCGTCAT CTTCAGTGAC CAATTTCTGC AACATCGCCG AATTTGTTGG
CCAAATAACG CTATTTACCT TGCCGTTGGT CAAAAAACCG CGCATGTTTT CAGCAAAGCC
TGCCAACAAT CAGTAGACTA TCCAGAAATA AGCGATAGTG AACATCTGCT GGCACTCAGT
ATGCTGCGTG ATGTCGCAGG TAAGAAGGTA TTGATCTTAC GTGGTAATGG TGGTCGTGAG
CTGATTTATT CCACCTTAGT GGAAAGAGGA GCGACTGTGC GCTATCAAGA AGCGTATTGT
CGGCACGAGC GGCCATTTGC CGCCGCCGAG TGTGTCCAAA AATGGCAGTT GGCGAAGGTC
GACTCACTGG TGATCACCAG CAGTGAGCAG TTGGCTTTTT TTATCCGTCA GTTCGAGACA
TCACACTTGC CATGGGTGCA GCAGTTAACT TTGCTCGTAC CCAGCCAACG GATTGCCACT
CTCGCCCACC AACTAGGATT TCATCGCATC GTGGTCACGC TAAGTGCTGC TAATCGCGAT
TTAGTCGCGG CATTGATGCC CGAAAAACCA ACAGGAACTC TGAGCAATGA CCAACAACAA
TAA
|
|---|
| Protein sequence | MIESVMTVLV TRPDEQGAEL CQLLHQQGIP ALHHPLLAIS ASPQLAALAE DLSSFDIIIA
VSQHAVIFSD QFLQHRRICW PNNAIYLAVG QKTAHVFSKA CQQSVDYPEI SDSEHLLALS
MLRDVAGKKV LILRGNGGRE LIYSTLVERG ATVRYQEAYC RHERPFAAAE CVQKWQLAKV
DSLVITSSEQ LAFFIRQFET SHLPWVQQLT LLVPSQRIAT LAHQLGFHRI VVTLSAANRD
LVAALMPEKP TGTLSNDQQQ
|
|---|
| |