| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2394 |
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| Symbol | lysA |
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| ID | 5136731 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2548796 |
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| End bp | 2550049 |
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| Gene Length | 1254 bp |
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| Protein Length | 417 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 640533846 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_001218294 |
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| Protein GI | 147674363 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 0.362349 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGGATTACT TCAATTATCA GGAAGATGGT CAGTTGTGGG CTGAGCAAGT TCCACTCGCC
GATTTGGCAA ACCAGTACGG TACACCGCTT TATGTTTACT CAAGAGCGAC ACTTGAGCGC
CATTGGCACG CGTTTGATAA ATCAGTCGGT GATTATCCTC ACCTAATTTG TTATGCGGTG
AAAGCCAACT CTAACTTAGG GGTATTGAAT ACTTTAGCTC GTTTGGGTTC AGGTTTTGAT
ATCGTCTCCG TTGGCGAATT AGAGCGTGTA TTGGCCGCCG GTGGTGACCC AAGCAAGGTG
GTATTCTCTG GTGTGGGTAA AACCGAAGCT GAGATGAAGC GCGCCCTGCA ATTGAAGATC
AAATGCTTTA ACGTGGAATC GGAGCCTGAG CTGCAGCGCC TGAATAAAGT GGCTGGCGAG
CTTGGTGTTA AAGCGCCGAT TTCACTGCGC ATCAATCCTG ATGTGGATGC CAAAACTCAC
CCTTACATTT CAACGGGTCT ACGTGATAAC AAATTTGGTA TCACCTTTGA CCGCGCAGCG
CAGGTATATC GCTTAGCGCA CAGCTTACCC AACCTCGATG TACATGGTAT TGACTGCCAT
ATCGGCTCAC AGCTAACCGC TCTCGCACCG TTTATTGATG CGACTGACCG TTTACTGGCA
CTGATTGATT CGCTGAAAGC GGAAGGCATT CATATCCGCC ACTTGGATGT CGGCGGTGGT
TTAGGGGTGG TTTATCGTGA TGAACTGCCT CCGCAGCCTT CGGAATACGC CAAAGCATTG
CTGGACCGCC TAGAGCGCCA CCGCGATTTA GAGCTGATTT TTGAACCGGG ACGCGCGATT
GCGGCTAACG CGGGAGTATT GGTGACTAAG GTGGAGTTTC TCAAACACAC TGAGCACAAA
AACTTCGCGA TCATTGATGC GGCGATGAAC GATTTGATCC GCCCGGCGCT ATACCAAGCG
TGGCAAGACA TCATTCCACT GCGTCCGCGC CAAGGCGAAG CCCAAACTTA TGATTTGGTT
GGCCCGGTGT GTGAAACCAG TGATTTCCTA GGGAAAGATC GCGACTTAGT GTTGCAAGAG
GGGGATTTAC TGGCGGTGCG CTCTTCTGGT GCGTATGGGT TTACCATGTC GTCGAATTAC
AATACCCGTC CGCGAGTGGC TGAAGTCATG GTTGATGGCA ATAAAACCTA TTTGGTGCGT
CAGCGTGAAG AGCTTAGCAG CTTGTGGGCG TTAGAATCGG TATTACCGGA GTAA
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| Protein sequence | MDYFNYQEDG QLWAEQVPLA DLANQYGTPL YVYSRATLER HWHAFDKSVG DYPHLICYAV
KANSNLGVLN TLARLGSGFD IVSVGELERV LAAGGDPSKV VFSGVGKTEA EMKRALQLKI
KCFNVESEPE LQRLNKVAGE LGVKAPISLR INPDVDAKTH PYISTGLRDN KFGITFDRAA
QVYRLAHSLP NLDVHGIDCH IGSQLTALAP FIDATDRLLA LIDSLKAEGI HIRHLDVGGG
LGVVYRDELP PQPSEYAKAL LDRLERHRDL ELIFEPGRAI AANAGVLVTK VEFLKHTEHK
NFAIIDAAMN DLIRPALYQA WQDIIPLRPR QGEAQTYDLV GPVCETSDFL GKDRDLVLQE
GDLLAVRSSG AYGFTMSSNY NTRPRVAEVM VDGNKTYLVR QREELSSLWA LESVLPE
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