| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2393 |
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| Symbol | dapF |
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| ID | 5137009 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2547954 |
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| End bp | 2548784 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 640533845 |
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| Product | diaminopimelate epimerase |
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| Protein accession | YP_001218293 |
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| Protein GI | 147673333 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0253] Diaminopimelate epimerase |
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| TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 0.976013 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCATTTCC ATTTTTCTAA AATGCACGGT TTGGGCAACG ACTTTATGGT CGTGGACTGT
ATTACCCAAA ACGTCTTCTT CTCTCCGGAA TTGATCCGCC GTCTGGCGGA TCGCCATACG
GGAGTCGGCT TTGATCAATT GTTGGTGGTT GAAGCGCCTT ACGATCCAGA ATCGGATTTC
CATTACCGCA TTTTCAATGC CGATGGCAGC GAAGTGGAGC AGTGTGGCAA TGGCGCGCGC
TGTTTTGCCC GTTTTGTACG CATGAAAGGG TTAACCAACA AGTACACCAT CCATGTCAGT
ACCAAGAAAG GCAAAATGGT ACTCAATGTG GAAGAGGAAG ATCTGATCAC CGTGAACATG
GGTGTGCCGG AGTTTGAGCC GAACAAGATC CCATTTCGCG CCAAACAGAG CGAAAAAACC
TACATTCTGC GTGTCGGTGA ACACACCTTG TTTTGCGGCG CGGTGAGTAT GGGCAACCCG
CATGTAGTGA CTGTGGTGGA CGATATCCGC ACTGCTGCGG TAGAAACCTT AGGGCCGCTT
TTGGAATCGC ACGAGCGTTT CCCTGAGCGC GTCAACGCCG GTTTTATGCA GGTCGTGAGC
CGTGATGAGA TCAATTTGCG CGTGTATGAA CGTGGTGCGG GCGAAACTCA AGCTTGTGGC
AGTGGCGCGT GCGCCGCGGT TGCGGTAGGC ATTTTGCAAG GTTTACTGGA TGAGCAAGTT
CGTGTCCATC TTCCCGGTGG TGAGCTGGAA ATCCACTGGC AAGGCCCCGG CAAACCGCTG
TATATGACAG GCCCGGCTAC TCATATCTAC GATGGCCAAA TCTCTTGCTA A
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| Protein sequence | MHFHFSKMHG LGNDFMVVDC ITQNVFFSPE LIRRLADRHT GVGFDQLLVV EAPYDPESDF
HYRIFNADGS EVEQCGNGAR CFARFVRMKG LTNKYTIHVS TKKGKMVLNV EEEDLITVNM
GVPEFEPNKI PFRAKQSEKT YILRVGEHTL FCGAVSMGNP HVVTVVDDIR TAAVETLGPL
LESHERFPER VNAGFMQVVS RDEINLRVYE RGAGETQACG SGACAAVAVG ILQGLLDEQV
RVHLPGGELE IHWQGPGKPL YMTGPATHIY DGQISC
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