Gene VC0395_A2367 details

Gene Information

• Locus tag: VC0395_A2367
• Symbol: trmA
• ID: 5135718
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: +
• Start bp: 2524317
• End bp: 2525426
• Gene Length: 1110 bp
• Protein Length: 369 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 640533819
• Product: tRNA (uracil-5-)-methyltransferase
• Protein accession: YP_001218267
• Protein GI: 147674711
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase
• TIGRFAM ID: [TIGR02143] tRNA (uracil-5-)-methyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.000000266683
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGACTC TTGATGTAAA CCCTGAACTC TACCAAGCTC AATTGGCAGA CAAAATCGCC 
CGTTTAAAAG CGATGTTTGT TGATTACTCC ATGCCTGAGC TGGAAGTGTT TGAGTCGCCA 
GTGGCGAATT ATCGTATGCG TGCTGAATTT CGGATTTGGC ATGAAGGCGA TGACATGTAC 
TACATCATGT TTAATCAAGA GACGCGCGAA AAGTACCGCG TGGATCAATT TCCAGCGGCG 
AGCCGCCTGA TTAACGATTT GATGCCTCTG CTGATGGATG CGATGAAAGG CAGCCCTATT 
CTGCGCCATA AACTGTTTCA GGTTGATTTC CTCTCAACCC TCAGTGGCGA GATTTTGGTT 
TCACTGCTGT ACCATCGACA GCTCAGCGAA GAATGGATCA CTGCGGCGCA AGCACTCAAA 
CAGCGCCTAA ACGATGAAGG GTTCAACCTG AACTTAATCG GCCGTGCTCG CAAAATGAAA 
GTAGTGCTGG ATCGTGATTA CGTGGTGGAG AATTTACAGG TCAATGGCCA GCCTTATGTA 
TATAAGCAAG TCGAAAACAG TTTTACCCAA CCTAATGCGA AGGTCGCCGA AAAAATGTTG 
GAGTGGGCGG TCGATTGTAC TCAAGAGAGC AAGGGGGATT TGCTTGAACT GTATTGCGGT 
AACGGCAACT TCTCACTCGC GTTAGCGCAA AACTTTGAGC GTGTACTGGC AACCGAATTA 
GCCAAACCTT CTGTAGAAGC CGCGCAATTT AATATTGCCG CGAACCAGAT CGGCAACGTG 
CAGATCATTC GCATGTCAGC AGAAGAGTTT ACTCAGGCGA TGGAAGGTAA ACGCGAATTC 
AATCGTTTGA AGGATGCGGG AGTCGATCTG CAAAGCTACC GTTGCAACAC TATTTTTGTC 
GACCCACCAC GCTCAGGCAT GGATATCGAC ACTTGTAAAA TGGTGCAAGG TTATGAGCGC 
ATTCTGTACA TCTCTTGTAA CCCAGAAACG CTGCAAGAGA ACTTACAAGT CTTGGGGGAA 
ACCCATCAAG TGGTGCGCTT TGCTCTCTTC GACCAATTTC CTTACACCCA CCACATGGAA 
GCGGGCGTGA TGTTAGAGCG CAAAAAGTAA 

 

Protein sequence

MATLDVNPEL YQAQLADKIA RLKAMFVDYS MPELEVFESP VANYRMRAEF RIWHEGDDMY 
YIMFNQETRE KYRVDQFPAA SRLINDLMPL LMDAMKGSPI LRHKLFQVDF LSTLSGEILV 
SLLYHRQLSE EWITAAQALK QRLNDEGFNL NLIGRARKMK VVLDRDYVVE NLQVNGQPYV 
YKQVENSFTQ PNAKVAEKML EWAVDCTQES KGDLLELYCG NGNFSLALAQ NFERVLATEL 
AKPSVEAAQF NIAANQIGNV QIIRMSAEEF TQAMEGKREF NRLKDAGVDL QSYRCNTIFV 
DPPRSGMDID TCKMVQGYER ILYISCNPET LQENLQVLGE THQVVRFALF DQFPYTHHME 
AGVMLERKK