| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2207 |
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| Symbol | pilQ |
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| ID | 5135510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2355046 |
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| End bp | 2356782 |
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| Gene Length | 1737 bp |
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| Protein Length | 578 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 640533663 |
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| Product | fimbrial assembly protein |
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| Protein accession | YP_001218123 |
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| Protein GI | 147673064 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000000276691 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAGTATA GAGATATAAC GATGAAAAAT GGATTGAAAA CTTATGTCGC ACAGACTTGG
CTGACCTTGT GGGTTGGTTT GGCACTTTGT GCTTCTTCCA TGGTGTTTAG TGCTGAATCC
GCTACCGCCA ACCAGTTGGA AAACATCGAC TTTCGGGTCA ACAAAGAGAA GGCGGCGGTC
TTAATTGTCG AATTGGCTTC GCCATCGGCG GTCGTGGATG TGCAAAAAGT CCAAGAAGGG
TTGAGCATTG AACTCCTGAA AACCGATGTG GCGGATGACA AGCTGTATCT GCTTGATGTG
AAAGATTTTT CGACCCCTGT TGAGAGCGTG GAAGTATTCC GTAAAGAGCC AAGCACACAA
CTGGTTGTGA CTGTCGATGG GGAGTTTCAG CACGATTATA CCTTAAAAGG AAAATACCTT
GAGGTCGTGA TCAGTAAACT CAAAGCCGAT GAAAAGCCTA AGCCCAAGAG TGTCTTGGAA
AAAGAAGGCA AGCTGATTTC AATTAACTTC CAAGATATTC CGGTGCGTAA CGTACTGCAG
CTGATTGCCG ATTATAACGG TTTCAACTTA GTGGTTTCCG ATTCGGTGGT GGGTAACCTG
ACTTTACGCT TGGATGGCGT GCCTTGGCAG CAAGTGTTGG ACATTATTCT GCAAGTCAAA
GGGCTCGATA AACGGGTCGA TGGTAATGTG ATTTTGATTG CGCCGAAAGA GGAACTCGAC
TTGCGCGAGA AACAAGCGCT CGAAAAAGCC CGTTTAGCAG AAGAGTTGGG CGATTTAAAA
TCAGAAATCA TCAAGATTAA CTTTGCCAAA GCGTCTGACA TTGCGGCGAT GATCGGCGGT
GAAGGCAACG TTAACATGTT GTCTGAACGA GGTTCGATCA GCATCGACGA ACGAACTAAC
TCGCTATTGA TCCGAGAGCT GCCCGATAAT ATTGCTGTGA TCCGCGAGAT CATTGAATCG
CTGGATATTC CGGTCAAACA AGTTCAAATC GAAGCGCGGA TTGTCACCGT CAAAGAAGGT
AACTTGGAGG AGCTGGGGGT ACGCTGGGGC GTGATGTCGA CCAATGGTAG CCACTCGGTC
GGAGGAAGCA TAGAGAGTAA CTTATGGCAA AAAGGGTTAT TGGCGGATGA TGAATTTCCG
GTGGATGAAT TCTTAAATGT GAATTTGGCT TCCACCTCTG CCAATGCGTC TTCGATTGCT
TTCCAAGTCG CTAAATTGGG CTCAGGTACG TTGTTGGATT TGGAGCTTTC AGCATTACAA
AATGAATCGA AGGCCGAAAT CATCTCTAGC CCTCGTTTGA TTACCACTAA TAAACAGCCT
GCCTATATTG AGCAAGGTAC TGAGATCCCT TATCTGGAAT CGTCTTCCAG TGGTGCCTCT
ACGGTCGCGT TTAAAAAAGC GGTATTAAGC TTGAAGGTGA CACCACAAAT CACCCCAGAT
AACCGCTTGG TGCTCGACTT GAGTGTGACC CAAGACCGAC GCGGTGAAAC GGTGAAAACC
GGTACGGGTG AAGCGGTATC GATCGATACT CAGCGTATTG GCACTCAAGT GTTGGTGAAT
AACGGAGAAA CTGTGGTGTT GGGTGGCATT TTCCAACACA GCATCAATAA TTCGGTAGAT
AAGGTGCCAC TGCTGGGGGA CTTGCCTGTT TTGGGGGCGT TATTCAGACG AACCTATGAG
CAAATGGGCA AAAGTGAACT GCTGATTTTT GTCACGCCGA AAGTGGTCAT TCAATAA
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| Protein sequence | MKYRDITMKN GLKTYVAQTW LTLWVGLALC ASSMVFSAES ATANQLENID FRVNKEKAAV
LIVELASPSA VVDVQKVQEG LSIELLKTDV ADDKLYLLDV KDFSTPVESV EVFRKEPSTQ
LVVTVDGEFQ HDYTLKGKYL EVVISKLKAD EKPKPKSVLE KEGKLISINF QDIPVRNVLQ
LIADYNGFNL VVSDSVVGNL TLRLDGVPWQ QVLDIILQVK GLDKRVDGNV ILIAPKEELD
LREKQALEKA RLAEELGDLK SEIIKINFAK ASDIAAMIGG EGNVNMLSER GSISIDERTN
SLLIRELPDN IAVIREIIES LDIPVKQVQI EARIVTVKEG NLEELGVRWG VMSTNGSHSV
GGSIESNLWQ KGLLADDEFP VDEFLNVNLA STSANASSIA FQVAKLGSGT LLDLELSALQ
NESKAEIISS PRLITTNKQP AYIEQGTEIP YLESSSSGAS TVAFKKAVLS LKVTPQITPD
NRLVLDLSVT QDRRGETVKT GTGEAVSIDT QRIGTQVLVN NGETVVLGGI FQHSINNSVD
KVPLLGDLPV LGALFRRTYE QMGKSELLIF VTPKVVIQ
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