Gene VC0395_A2200 details

Gene Information

• Locus tag: VC0395_A2200
• Symbol: trpS
• ID: 5135293
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Vibrio cholerae O395
• Kingdom: Bacteria
• Replicon accession: NC_009457
• Strand: -
• Start bp: 2348144
• End bp: 2349241
• Gene Length: 1098 bp
• Protein Length: 365 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 640533656
• Product: tryptophanyl-tRNA synthetase
• Protein accession: YP_001218116
• Protein GI: 147673103
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0180] Tryptophanyl-tRNA synthetase
• TIGRFAM ID: [TIGR00233] tryptophanyl-tRNA synthetase

Plasmid Coverage information

• Num covering plasmid clones: 48
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGAACCGCG CCGATTCCGT GCGCGGTTTT TGTCCCTTTG TTTTGTGTAA TTTCAATTTC 
AGTCACAAGG AAATCAAACC CATGAGCAAA CCCATTGTAT TGAGTGGTGT TCAACCGTCA 
GGTGAACTAA GTATCGGTAA CTACTTGGGT GCTCTACGTC AATGGCAACA GATGCAAGAT 
GATTATGACT GCCAGTACTG TGTTGTGGAT TTGCATGCAA TTACGGTTCG CCAAGATCCG 
CAAGCACTGC ATGAAGCGAC ATTAGATGCT TTGGCTATTT GTCTCGCCGT TGGCGTTGAT 
CCGAAAAAGA GCACGCTATT TGTTCAGTCA CACGTACCTG AGCATGCTCA ACTCGGTTGG 
GTTTTGAACT GCTACACCCA GATGGGTGAG CTGAGCCGCA TGACTCAATT CAAAGACAAA 
TCAGCACGTT ACGCCAACGA TGTGAATGCT GGTCTGTTTG GTTATCCGGT ACTGATGGCG 
GCAGATATTC TGCTGTATGG CGCGCACCAA GTGCCAGTGG GCAGCGATCA GAAACAACAT 
CTGGAATTGG CACGCGATAT CGCGACCCGT TTCAACAATA TCTACAGCCC AGAACAGCCG 
ATTTTTACCA TTCCTGAGCC TTACATCCCA ACCGTGAATG CGCGGGTAAT GAGTCTGCAA 
GATGCGACTA AGAAAATGTC CAAATCAGAC GATAACCGCA AAAACGTGAT CACCTTGTTG 
GAAGATCCGA AATCGATCAT CAAGAAGATC AATAAGGCGC AGACCGATGC GGAAACCCCA 
CCGCGTATCG CTTACGATGT TGAAAACAAA GCAGGCATCG CGAACCTGAT GGGACTCTAT 
TCTGCCGCGA CAGGTAAAAC CTTCGCCGAA ATCGAAGCTC AGTACGCAGG CGTTGAAATG 
TACGGCCCAT TTAAGAAAGA TGTGGGTGAG GCTGTGGTGG CCATGCTTGA ACCCGTGCAA 
GCAGAATACC AACGCATCCG TAACGATCGC GAATACCTGA ACAGTGTAAT GCGTGATGGC 
GCAGAAAAAG CCTCGGCAAA AGCGCTGCAA ACGCTGAAAA AAGTCTATGC GGCGGTTGGT 
TTTGTGGCGC GTCCTTAA 

 

Protein sequence

MNRADSVRGF CPFVLCNFNF SHKEIKPMSK PIVLSGVQPS GELSIGNYLG ALRQWQQMQD 
DYDCQYCVVD LHAITVRQDP QALHEATLDA LAICLAVGVD PKKSTLFVQS HVPEHAQLGW 
VLNCYTQMGE LSRMTQFKDK SARYANDVNA GLFGYPVLMA ADILLYGAHQ VPVGSDQKQH 
LELARDIATR FNNIYSPEQP IFTIPEPYIP TVNARVMSLQ DATKKMSKSD DNRKNVITLL 
EDPKSIIKKI NKAQTDAETP PRIAYDVENK AGIANLMGLY SAATGKTFAE IEAQYAGVEM 
YGPFKKDVGE AVVAMLEPVQ AEYQRIRNDR EYLNSVMRDG AEKASAKALQ TLKKVYAAVG 
FVARP