| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A2109 |
|---|
| Symbol | rpoN |
|---|
| ID | 5136127 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Vibrio cholerae O395 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009457 |
|---|
| Strand | + |
|---|
| Start bp | 2265078 |
|---|
| End bp | 2266541 |
|---|
| Gene Length | 1464 bp |
|---|
| Protein Length | 487 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 640533565 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_001218025 |
|---|
| Protein GI | 147673900 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 38 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCGT CATTACAGCT CAAGCTAGGT CAACAGTTAG CCATGACTCC GCAGCTCCAG
CAGGCGATTC GTCTGTTGCA GCTTTCGACG CTGGATCTGC AGCAAGAAAT TCAGGAAGCA
TTGGAATCTA ACCCCTTGTT AGAGGTGGAA GAGAACCAAG ACGAAGCGCC ATCGCTTGAT
AGCGTACGTA TGACGGAAGA AAGCCCGCGC GAGCCAGAAG AACTCTACGA ACCTGAACCG
CAGGATAGCT CGGATCTGAT TGAAAAATCG GAAATCAGCG CTGAATTAGA GATGGATACC
ACTTGGGATG AAGTCTACAG CGCCAATACT GGCAGTACAG GACTGGCACT CGATGATGAT
GCCCCTATCT ACCAAGGCGA AACCACCCAA ACCCTGCAAG ATTATCTTCA CTGGCAACTC
GACTTAACTC CCTTTAGCGA TGTGGATCGC ACCATTGCCG TTGCACTTAT CGATGCTATC
GACGATTACG GTTATTTAAC CGTCTCACTA GAGGAGATCC AAGAGAGCCT GCGCAGTGAT
GACATTGAGT TGGATGAGAT TGAAGCGGTA CGTAAACGCA TTCAGCAGTT TGACCCCTTT
GGTGTGGCAT CGCTTAATCT GCAAGACTGC TTGTTGCTGC AACTCACCAC CTATCCCTGT
GATACTCCTT GGCTGGAAGA AGCGCGTTTA CTGCTCTCAC AGTACATCGA TGATTTAGGG
AATCGCGATT ACAAAACCAT TCTGAAAGAG ACTAAGCTCA AAGAAGAGGA CTTGCGCGAG
ATCCTGCAAC TCATCCAACA GCTCGATCCT CGCCCCGGCA GTCGAATTGC CCAAGATCAC
GCTGAATACG TTATACCTGA CGTGTCAGTC TATAAAGAAC AAGGTCGATG GCTGGTCACC
ATCAACCCAG ATAGTGTGCC TAAACTGAAG ATCAATCAGC AGTATGCCGA CCTGATGCGC
GGTAATAATG CGGAGAGCAA CTACATCCGT ACCAATTTGC AAGAGGCAAA ATGGCTGATC
AAAAGTTTAG AAAGTAGAAA CGAGACACTG CTCAAAGTTG CCAAGTGCAT AGTTGAACAC
CAACACGATT TCTTCGAGTA TGGAGAAGAG GCGATGAAGC CGATGGTGCT CAACGATGTG
GCGATGGCGG TGGAAATGCA TGAATCGACA ATTTCGCGTG TCACCACGCA GAAATACATG
CATACCCCGC GCGGCATTTT TGAGTTGAAG TACTTTTTCT CCAGCCACGT CAGTACTGAC
AATGGCGGAG AGTGCTCGTC CACTGCGATC AGGGCGCTGA TCAAAAAACT GGTGGCGGCA
GAGAATCCTG CCAAACCACT CAGTGACAGC AAGATCGCAA CCCTACTCGC TGACCAAGGC
ATCCAAGTCG CGCGGCGAAC CATCGCCAAA TATCGTGAAT CACTTGGCAT CGCCCCATCA
AGTCAGCGCA AACGCCTGCT ATAG
|
|---|
| Protein sequence | MKPSLQLKLG QQLAMTPQLQ QAIRLLQLST LDLQQEIQEA LESNPLLEVE ENQDEAPSLD
SVRMTEESPR EPEELYEPEP QDSSDLIEKS EISAELEMDT TWDEVYSANT GSTGLALDDD
APIYQGETTQ TLQDYLHWQL DLTPFSDVDR TIAVALIDAI DDYGYLTVSL EEIQESLRSD
DIELDEIEAV RKRIQQFDPF GVASLNLQDC LLLQLTTYPC DTPWLEEARL LLSQYIDDLG
NRDYKTILKE TKLKEEDLRE ILQLIQQLDP RPGSRIAQDH AEYVIPDVSV YKEQGRWLVT
INPDSVPKLK INQQYADLMR GNNAESNYIR TNLQEAKWLI KSLESRNETL LKVAKCIVEH
QHDFFEYGEE AMKPMVLNDV AMAVEMHEST ISRVTTQKYM HTPRGIFELK YFFSSHVSTD
NGGECSSTAI RALIKKLVAA ENPAKPLSDS KIATLLADQG IQVARRTIAK YRESLGIAPS
SQRKRLL
|
|---|
| |