Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | VC0395_A2001 |
Symbol | pilC |
ID | 5137670 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Vibrio cholerae O395 |
Kingdom | Bacteria |
Replicon accession | NC_009457 |
Strand | + |
Start bp | 2152568 |
End bp | 2153794 |
Gene Length | 1227 bp |
Protein Length | 408 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 640533458 |
Product | type IV pilin biogenesis protein PilC |
Protein accession | YP_001217925 |
Protein GI | 147673666 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1459] Type II secretory pathway, component PulF |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 0.148255 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCGA CCCAAACCTT ACCTCTGAAA AATTATCGCT GGAAAGGCAT CAACAGCAAC GGCAAAAAAG TTTCCGGCCA GATGCTCGCC ATCTCCGAAA TCGAGGTGCG CGATAAGCTC AAAGATCAGC ATATTCAGAT CAAAAAACTC AAAAAAGGCA GTGTATCTCT TTTGGCACGC CTAACCCATC GCGTGAAAAG TAAAGATATT ACGATTTTGA CTCGGCAGTT GGCGACCATG CTCACCACGG GCGTACCCAT TGTGCAAGCC CTCAAGTTGG TGGGCGATAA TCACCGTAAA GCTGAGATGA AATCGATTCT GGCGCAAATC ACCAAAAGCG TGGAAGCGGG CACGCCACTT TCCAAGGCGA TGCGCACCGC CAGCGCCCAT TTTGATACCT TGTATGTCGA TTTAGTGGAA ACCGGAGAGA TGTCCGGTAA CTTACCTGAG GTGTTTGAGC GTTTGGCCAC CTACCGCGAG AAAAGCGAGC AACTACGCGC CAAGGTGATT AAAGCGCTCA TCTACCCCAG CATGGTTGTG TTGGTCGCGC TCGGGGTATC TTACTTAATG CTCACCATGG TCATCCCAGA GTTTGAAAGC ATGTTTAAAG GCTTTGGTGC TGAACTGCCT TGGTTTACGC AGCAAGTGCT GAAACTCTCA CACTGGGTGC AGGCTTACAG TTTATGGGCA TTTATCGCCA TCGCAGCAGC CATTTTTGGC TTGAAAGCGC TGCGTAAAAA CTCTTTCCAG ATCCGTTTAA AAACCAGCCG CTTAGGGCTG AAATTTCCGA TTATTGGTAA TGTGCTCGCT AAGGCTTCCA TCGCCAAATT CAGCCGTACC CTCGCCACCA GCTTTGCCGC GGGGATCCCA ATTCTCGCCA GTTTAAAAAC CACGGCCAAA ACCTCCGGCA ATGTGCACTT TGAAACCGCG ATTAATGAGG TGTACCGCGA TACCGCTGCG GGTATGCCGA TGTACATTGC TATGCGCAAT ACCGAAGCTT TTCCCGAAAT GGTGCTGCAA ATGGTGATGA TCGGTGAAGA GTCTGGGCAA TTAGACGACA TGCTCAACAA GGTCGCGACC ATCTATGAAT TTGAAGTCGA TAACACGGTC GATAACTTGG GCAAGATTCT TGAACCACTG ATCATCGTCT TTCTTGGGAC GGTTGTGGGC GGCTTAGTGG TGGCGATGTA CTTACCTATC TTTAACTTAA TGAGTGTATT GGGTTAG
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Protein sequence | MKATQTLPLK NYRWKGINSN GKKVSGQMLA ISEIEVRDKL KDQHIQIKKL KKGSVSLLAR LTHRVKSKDI TILTRQLATM LTTGVPIVQA LKLVGDNHRK AEMKSILAQI TKSVEAGTPL SKAMRTASAH FDTLYVDLVE TGEMSGNLPE VFERLATYRE KSEQLRAKVI KALIYPSMVV LVALGVSYLM LTMVIPEFES MFKGFGAELP WFTQQVLKLS HWVQAYSLWA FIAIAAAIFG LKALRKNSFQ IRLKTSRLGL KFPIIGNVLA KASIAKFSRT LATSFAAGIP ILASLKTTAK TSGNVHFETA INEVYRDTAA GMPMYIAMRN TEAFPEMVLQ MVMIGEESGQ LDDMLNKVAT IYEFEVDNTV DNLGKILEPL IIVFLGTVVG GLVVAMYLPI FNLMSVLG
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