Gene VC0395_A1964 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1964 
Symbol 
ID5136160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand+ 
Start bp2104856 
End bp2105467 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content32% 
IMG OID640533421 
Producthypothetical protein 
Protein accessionYP_001217888 
Protein GI147674421 
COG category[R] General function prediction only 
COG ID[COG3950] Predicted ATP-binding protein involved in virulence 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones48 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAGTTA TAAAAAATGG AAGTGAGATT AGTATTTTTA ATCTATCTCA GGGTGAGAAA 
ACACTTATCG CTTTGGTTTC TGATATCGCT CGAAGATTAG TAATACTAAA TCCTAGCTTA 
GAAAATCCGT TAAATGGATA TGGTATTGTT TTAATCGATG AAATTGATCT TCATTTACAT 
CCTAAATGGC AACAAACTAT TGTTCAAAAA CTAGAAAATA CCTTCCCAAA TATCCAATTC 
ATCCTATCAA CGCATAGCCC ACTAGTTCTA ACAACAGTTA CTTCGGAACA AATAAAAATA 
ATTAATGAAT TAGACTATAG ATTCAAATTA CTATCTCCAA CAAGCAATCC ATTTGGCAAA 
AATGCCTCGG ATGCACTAGC TATCATGGAA ACATCCGAAT CTCCATTAGT TCATAGTGAA 
GAAATTTTAG CTCTTATAAA AAAATATGAA TCTCTGGTGA AAAGAGGACA AGAAGATTGT 
CGAAAGACCA AAGAGATTAA AAAACGCATA GAAAGCACTG GATATACATT TGATATAGCA 
GACATTGAAA TGTGGCGTTT TATAGCAGAA AATCGTGAAT TTTTTATCGA TAAATCTGAA 
AGTGATGACT AA
 
Protein sequence
MTVIKNGSEI SIFNLSQGEK TLIALVSDIA RRLVILNPSL ENPLNGYGIV LIDEIDLHLH 
PKWQQTIVQK LENTFPNIQF ILSTHSPLVL TTVTSEQIKI INELDYRFKL LSPTSNPFGK 
NASDALAIME TSESPLVHSE EILALIKKYE SLVKRGQEDC RKTKEIKKRI ESTGYTFDIA 
DIEMWRFIAE NREFFIDKSE SDD