Gene VC0395_A1949 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1949 
Symbol 
ID5137025 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand
Start bp2081021 
End bp2082760 
Gene Length1740 bp 
Protein Length579 aa 
Translation table11 
GC content49% 
IMG OID640533406 
Productsensory box/GGDEF family protein 
Protein accessionYP_001217873 
Protein GI147673373 
COG category[T] Signal transduction mechanisms 
COG ID[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.773832 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCTGAAT TTCTCTCTGA ATTTGTACGT TTCTTGTTCG CTGCCGGGCT TGTGCTTGGT 
GGTGGGTTAT GGCTTTTTTC AGGATGGCAG CGCTATGTTC AACCTCAACA GTGGATTCAG
TTACTTCACC ATGCACCGTC AGGGATGCTC TTGGTAGGAG AGGATCGCGT TTTACGTGCC
AATCTTGCCG CGTATTTGTT ACTGGGGATC CGCTTGGTGG GACGTCACTA TCTGTTTTCT
GCCGAGCAGA GTGAAGAGAG TCAGCAAGCT TTTTATCGAG CGCTCGCCAG CAGTGCACAG
CAAAAGCGTT CCGTCCCTCT GCTTTGGCCT GTGCCGGGCA ATTTGACCCA AACTCTAGAG
ATCTCAGCTT CGCTCTTACG TCGTTGGCCG AAGAAATTAT GGCTAGTGAA TGTGATTGGT
TTTGAGTGTC CCAGCCATGA CATTCAACAA GAGCGCCACT CACTGGCGAT AGCGCGCACG
GCACTTGATT CCCTCTCCGA GCTGATTTTT ATTAAAAGTA CCGAAGGCCA CTTAATCGCA
ACCAACCGAG CGTTTGATCA GTTTTGGCAA GGCCGGATTG AAGAGGGCAG CGCTACTTTT
AAAGGCATTA TGAAAGGGCG CACGAGTCAG CGTTGCTGGA CTGTGACGCC TGATGGGCGC
AGCTGTCTGT TAGAAACCTA CCAACGGGTA TTGATGTCGC CGCAAGGTGA AAATATTGGG
CTACTTGGCA TCAGTCATGA TGTGACCGAC TGGTACAACA TGCAGCGTCA ATTAAGAGAA
GAGATGGAAA AACGCCGTGA CACCGAAGTG GCATTGGCAC AGCGCGATAC GATTTTACAA
AACATCTTAG AATCTAGCCC CGATTCGATT GGTATCTTCA ATGAAAACAT GGTCTACCAA
GCCTGTAACC AGCCGTTTGT GGAAGCTCTC GGGATCGCGG AAGTGTCAGA TCTGGTTGGT
AAACGGCTGC AAGATGTGAT CCCCGAGCAC ATCTATGCGC GTCTTTCCGA TACGGATAGC
CAAGTCCTGC ACCAAGGTAA GTCTCTGCGC TACATCGACA GAATTGAACG CTCAGATGGT
GAGTTTATCT GGTTTGATGT TGTGAAATCG CCTTTTCGAG ATCCGGCTTC GGGCACCAAT
GGCGTGCTGA TCATGGCGCG AGATGTGTCG GAGCGCTATC TCGCCGCTGA ACAATTAGAA
GCCGCCAACC AAGAGCTGGA ACGCCTAAGC TTTTTAGATA GCTTGACTCA TGTTGCCAAT
CGTCGTCGTT TTGATGAACA ACTGCATACC CTCTGGCATT TGCATGTGCG TGAAGGCAAA
CCATTAAGCA TCATTCTGTG TGATGTCGAT TATTTCAAAG ATTACAACGA CGCTTATGGC
CATTTGATGG GCGATGAGAC GCTCAAACAG ATAGCGATTG CCTTTACTCA AGTCGCCAAT
CGCCATTCTG ATTGTGTTGC CCGCTACGGG GGAGAAGAGT TTGGTATTTT GCTGCCCAAT
ACACCACAGT CCGGAGCAAT ACTGGTCGCA GAGCGAATCC ATGAGAAAGT TCGTGGATTA
GCGATTCCAC ATGATCATTC TAAGGTTGCC GATAGGATTA CCGTCAGCTT AGGCATAGTG
ACGCTTATTC CTCGGCCTGA GGATGTACCT GAGCAAATGG TTGAGCTAGC GGATCGGGCT
TTATACCAAG CCAAAGCGAA TGGCCGCAAT CAGACCTCAA TTTATCAACC AAACCACTAA
 
Protein sequence
MPEFLSEFVR FLFAAGLVLG GGLWLFSGWQ RYVQPQQWIQ LLHHAPSGML LVGEDRVLRA 
NLAAYLLLGI RLVGRHYLFS AEQSEESQQA FYRALASSAQ QKRSVPLLWP VPGNLTQTLE
ISASLLRRWP KKLWLVNVIG FECPSHDIQQ ERHSLAIART ALDSLSELIF IKSTEGHLIA
TNRAFDQFWQ GRIEEGSATF KGIMKGRTSQ RCWTVTPDGR SCLLETYQRV LMSPQGENIG
LLGISHDVTD WYNMQRQLRE EMEKRRDTEV ALAQRDTILQ NILESSPDSI GIFNENMVYQ
ACNQPFVEAL GIAEVSDLVG KRLQDVIPEH IYARLSDTDS QVLHQGKSLR YIDRIERSDG
EFIWFDVVKS PFRDPASGTN GVLIMARDVS ERYLAAEQLE AANQELERLS FLDSLTHVAN
RRRFDEQLHT LWHLHVREGK PLSIILCDVD YFKDYNDAYG HLMGDETLKQ IAIAFTQVAN
RHSDCVARYG GEEFGILLPN TPQSGAILVA ERIHEKVRGL AIPHDHSKVA DRITVSLGIV
TLIPRPEDVP EQMVELADRA LYQAKANGRN QTSIYQPNH