Gene VC0395_A1938 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVC0395_A1938 
Symbolung 
ID5135252 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVibrio cholerae O395 
KingdomBacteria 
Replicon accessionNC_009457 
Strand- 
Start bp2068117 
End bp2068797 
Gene Length681 bp 
Protein Length226 aa 
Translation table11 
GC content49% 
IMG OID640533395 
Producturacil-DNA glycosylase 
Protein accessionYP_001217862 
Protein GI147675455 
COG category[L] Replication, recombination and repair 
COG ID[COG0692] Uracil DNA glycosylase 
TIGRFAM ID[TIGR00628] uracil-DNA glycosylase 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.000104572 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAAT CACTGACGTG GCATGATGTC ATTGGTAATG AAAAGCAGCA GGCTTACTTT 
CAACAAACTC TGCAATTTGT CGAAAGCCAG CGTCAAGCCG GAAAAGTTAT CTATCCTCCC 
GCTAAAGATG TGTTTAACGC CTTTCGCTTT ACCGAGTTTG GTGACGTGAA AGTGGTGATC 
TTGGGGCAAG ATCCTTATCA CGGCCCTAAT CAGGCGCATG GTTTGTGTTT CTCTGTGCTA 
CCGGGTGTCA AAACACCGCC CTCGTTAGTC AATATTTATA AAGAGTTAGC GCAAGATATC 
CCTGGATTTC AAATCCCACC TCATGGCTAC CTACAAAGTT GGGCACAGCA GGGCGTTTTG 
CTACTCAACA CCGTATTGAC TGTTGAACAA GGTATGGCCC ATTCTCATGC GAATACCGGC 
TGGGAAACCT TCACGGATCG TGTGATTGAC GCCTTGAATC AACACCGAAA TGGGTTGATC 
TTCCTATTGT GGGGATCGCA CGCGCAGAAA AAGGGCCAGA TGATCGATCG CCAGCGCCAT 
CATGTCTTGA TGGCTCCGCA CCCTTCACCG CTTTCGGCGC ACAGGGGCTT TTTAGGATGT 
CGGCATTTCT CTAAAACCAA TCAATTGCTG CAAGCGCAAG GTATCGCTCC CATTAACTGG 
CAGCCCGAGC TCGAATCTTA A
 
Protein sequence
MSESLTWHDV IGNEKQQAYF QQTLQFVESQ RQAGKVIYPP AKDVFNAFRF TEFGDVKVVI 
LGQDPYHGPN QAHGLCFSVL PGVKTPPSLV NIYKELAQDI PGFQIPPHGY LQSWAQQGVL 
LLNTVLTVEQ GMAHSHANTG WETFTDRVID ALNQHRNGLI FLLWGSHAQK KGQMIDRQRH 
HVLMAPHPSP LSAHRGFLGC RHFSKTNQLL QAQGIAPINW QPELES