| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | VC0395_A1928 |
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| Symbol | deoA |
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| ID | 5137644 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Vibrio cholerae O395 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009457 |
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| Strand | - |
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| Start bp | 2058869 |
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| End bp | 2060296 |
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| Gene Length | 1428 bp |
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| Protein Length | 475 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 640533385 |
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| Product | thymidine phosphorylase |
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| Protein accession | YP_001217852 |
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| Protein GI | 147673836 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0213] Thymidine phosphorylase |
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| TIGRFAM ID | [TIGR02643] thymidine phosphorylase
[TIGR02644] pyrimidine-nucleoside phosphorylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 0.939437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTGTCTGA GAGCAGCGCG AGGCTTCGCG CTGCTTAACC TCTTTACACT ACGCAGTTTC
TTTGGGAACT GGGAGGCAGC TATGTCTTTA TCTCAAGCAA AGTATTTACC TCAAGAAATT
ATCCGCAGAA AGCGTGATGG TGAAGTTCTC ACCAACGATG AAATCAACTT CTTCATTCAA
GGTGTGGCGA ATAACACCGT CTCTGAAGGG CAAATTGCCG CGTTTGCGAT GGCGATTTTT
TTCCGTGAAA TGACTATGCC TGAGCGTATT GCACTGACGT GCGCGATGCG CGATTCCGGT
ATGGTGATTG ATTGGAGCCA CATGAATTTT GATGGTCCGA TTGTGGATAA ACACTCCACG
GGCGGCGTGG GCGATGTGAC CTCACTGATG CTTGGCCCTA TGGTGGCAGC CTGTGGCGGT
TATGTGCCGA TGATTTCTGG CCGCGGCCTT GGTCACACTG GGGGGACGCT CGACAAACTT
GAAGCCATCC CCGGCTATAA CATTACCCCA ACCAATGACG TGTTTGGCAA AGTGACCAAA
CAAGCCGGCG TGGCGATCAT CGGCCAAACT GGCGATCTGG CTCCGGCGGA TAAGCGTGTG
TACGCAACGC GTGATATTAC CGCGACAGTG GATAACATCT CGCTGATCAC CGCTTCAATT
CTTTCTAAGA AACTGGCGGC TGGCCTTGAA TCGCTCGTGA TGGATGTGAA AGTTGGCTCT
GGTGCTTTCA TGCCAACTTA CGAAGCGTCT GAAGAGCTCG CCAAATCGAT CGTGGCAGTG
GCCAACGGTG CAGGCACCAA TACCACGGCG ATCTTAACTG ATATGAACCA AGTGCTGGCG
TCTTCAGCGG GTAACGCGGT GGAAGTGCGT GAAGCAGTAC GCTTCCTCAC CGGCGAATAC
CGTAATCCGC GTCTGCTGGA AGTCACTATG GCGTCGTGTG CGGAAATGCT GGTACTTGGC
AAGTTAGCCA AAGATACCGC GCAAGCGCGT GAGAAACTGC AAGCAGTGCT GGATAACGGC
CAAGCCGCCG AGCGTTTTGG CAAAATGGTC GCAGGCCTCG GTGGCCCAAG CGATTTTGTT
GAAAACTACG ACAAGTATCT TGCGAAAGCT GAGATTGTTC GCCCAGTTTA CGCTCAGCAA
TCTGGCGTTA TTTCTGCGAT GGATACCCGT GCCATCGGCA TGGCGGTGGT CGGCATGGGC
GGTGGCCGCC GCGTGGCGAC CGATCGTATC GATTACGCTG TCGGTTTTGA TCAGTTTATC
CGTCTGGGTG AAATCGCCGA CAGCAACAAA CCTTTAGCAA TGATTCATGC CCGTAATGAA
GAGCAGTGGC AACAAGCTGC CAATGCACTA CAAAGTGCGA TTAAAGTGGG CGGTGATTAC
CTACCAACAC CGGATGTTTA CCGTCAAATT CGAGCACAAG ACGTGTAA
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| Protein sequence | MCLRAARGFA LLNLFTLRSF FGNWEAAMSL SQAKYLPQEI IRRKRDGEVL TNDEINFFIQ
GVANNTVSEG QIAAFAMAIF FREMTMPERI ALTCAMRDSG MVIDWSHMNF DGPIVDKHST
GGVGDVTSLM LGPMVAACGG YVPMISGRGL GHTGGTLDKL EAIPGYNITP TNDVFGKVTK
QAGVAIIGQT GDLAPADKRV YATRDITATV DNISLITASI LSKKLAAGLE SLVMDVKVGS
GAFMPTYEAS EELAKSIVAV ANGAGTNTTA ILTDMNQVLA SSAGNAVEVR EAVRFLTGEY
RNPRLLEVTM ASCAEMLVLG KLAKDTAQAR EKLQAVLDNG QAAERFGKMV AGLGGPSDFV
ENYDKYLAKA EIVRPVYAQQ SGVISAMDTR AIGMAVVGMG GGRRVATDRI DYAVGFDQFI
RLGEIADSNK PLAMIHARNE EQWQQAANAL QSAIKVGGDY LPTPDVYRQI RAQDV
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